Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_415

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_414 and Pf1N1B4_415 are separated by 242 nucleotidesPf1N1B4_415 and Pf1N1B4_416 are separated by 57 nucleotidesPf1N1B4_416 and Pf1N1B4_417 are separated by 16 nucleotides Pf1N1B4_414 - transcriptional regulator, at 483,634 to 484,350 _414 Pf1N1B4_415 - Lipase precursor (EC 3.1.1.3), at 484,593 to 485,471 _415 Pf1N1B4_416 - FIG003620: Proteophosphoglycan precursor (Fragment), at 485,529 to 486,089 _416 Pf1N1B4_417 - lipoprotein, putative, at 486,106 to 486,711 _417 Position (kb) 484 485 486Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 483.635 kb on + strandat 483.636 kb on - strandat 483.926 kb on + strand, within Pf1N1B4_414at 483.965 kb on + strand, within Pf1N1B4_414at 483.965 kb on + strand, within Pf1N1B4_414at 483.966 kb on - strand, within Pf1N1B4_414at 483.966 kb on - strandat 483.966 kb on - strandat 483.966 kb on - strand, within Pf1N1B4_414at 484.148 kb on - strand, within Pf1N1B4_414at 484.523 kb on - strandat 484.523 kb on - strandat 484.527 kb on + strandat 484.527 kb on + strandat 484.527 kb on + strandat 484.528 kb on - strandat 484.588 kb on + strandat 484.588 kb on + strandat 484.589 kb on - strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.592 kb on + strandat 484.593 kb on - strandat 484.617 kb on - strandat 484.624 kb on - strandat 484.624 kb on - strandat 484.680 kb on + strandat 484.870 kb on - strand, within Pf1N1B4_415at 484.874 kb on - strandat 484.996 kb on + strand, within Pf1N1B4_415at 485.124 kb on + strand, within Pf1N1B4_415at 485.124 kb on + strand, within Pf1N1B4_415at 485.125 kb on - strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strandat 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strand, within Pf1N1B4_415at 485.184 kb on + strandat 485.185 kb on - strand, within Pf1N1B4_415at 485.185 kb on - strand, within Pf1N1B4_415at 485.185 kb on - strand, within Pf1N1B4_415at 485.187 kb on + strandat 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.187 kb on + strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.188 kb on - strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.190 kb on + strand, within Pf1N1B4_415at 485.191 kb on - strandat 485.209 kb on + strand, within Pf1N1B4_415at 485.258 kb on + strand, within Pf1N1B4_415at 485.259 kb on - strand, within Pf1N1B4_415at 485.259 kb on - strand, within Pf1N1B4_415at 485.280 kb on + strand, within Pf1N1B4_415at 485.280 kb on + strand, within Pf1N1B4_415at 485.280 kb on + strandat 485.319 kb on + strand, within Pf1N1B4_415at 485.430 kb on + strandat 485.431 kb on - strandat 485.460 kb on - strandat 485.460 kb on - strandat 485.469 kb on + strandat 485.470 kb on - strandat 485.630 kb on - strand, within Pf1N1B4_416at 485.630 kb on - strand, within Pf1N1B4_416at 485.630 kb on - strand, within Pf1N1B4_416at 485.630 kb on - strand, within Pf1N1B4_416at 485.680 kb on + strand, within Pf1N1B4_416at 485.681 kb on - strand, within Pf1N1B4_416at 485.724 kb on - strand, within Pf1N1B4_416at 485.724 kb on - strand, within Pf1N1B4_416at 485.878 kb on + strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strand, within Pf1N1B4_416at 485.879 kb on - strandat 485.953 kb on + strand, within Pf1N1B4_416at 485.953 kb on + strand, within Pf1N1B4_416at 485.954 kb on - strand, within Pf1N1B4_416at 485.954 kb on - strand, within Pf1N1B4_416at 485.954 kb on - strand, within Pf1N1B4_416at 485.956 kb on + strandat 485.956 kb on + strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 485.957 kb on - strand, within Pf1N1B4_416at 486.107 kb on + strandat 486.108 kb on - strandat 486.141 kb on - strandat 486.196 kb on + strand, within Pf1N1B4_417at 486.216 kb on + strand, within Pf1N1B4_417at 486.216 kb on + strand, within Pf1N1B4_417at 486.216 kb on + strand, within Pf1N1B4_417at 486.217 kb on - strand, within Pf1N1B4_417at 486.226 kb on - strand, within Pf1N1B4_417at 486.236 kb on + strand, within Pf1N1B4_417at 486.365 kb on + strand, within Pf1N1B4_417at 486.365 kb on + strand, within Pf1N1B4_417at 486.365 kb on + strandat 486.365 kb on + strand, within Pf1N1B4_417at 486.374 kb on + strand, within Pf1N1B4_417at 486.455 kb on + strand, within Pf1N1B4_417at 486.455 kb on + strand, within Pf1N1B4_417at 486.456 kb on - strand, within Pf1N1B4_417

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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483,635 + -0.5
483,636 - -0.8
483,926 + Pf1N1B4_414 0.41 -0.1
483,965 + Pf1N1B4_414 0.46 -0.8
483,965 + Pf1N1B4_414 0.46 -2.1
483,966 - Pf1N1B4_414 0.46 -0.1
483,966 - -0.1
483,966 - -0.1
483,966 - Pf1N1B4_414 0.46 -1.6
484,148 - Pf1N1B4_414 0.72 +0.4
484,523 - +1.9
484,523 - +0.4
484,527 + -0.1
484,527 + +1.7
484,527 + -1.1
484,528 - -2.6
484,588 + -0.1
484,588 + -1.1
484,589 - -0.1
484,592 + +1.5
484,592 + +1.2
484,592 + -2.1
484,592 + -0.8
484,592 + -1.6
484,593 - -0.1
484,617 - +0.4
484,624 - +0.4
484,624 - -0.8
484,680 + -2.1
484,870 - Pf1N1B4_415 0.32 -1.2
484,874 - -0.1
484,996 + Pf1N1B4_415 0.46 -0.1
485,124 + Pf1N1B4_415 0.60 -2.1
485,124 + Pf1N1B4_415 0.60 -0.5
485,125 - Pf1N1B4_415 0.61 +0.3
485,184 + Pf1N1B4_415 0.67 -1.6
485,184 + -1.6
485,184 + Pf1N1B4_415 0.67 -3.2
485,184 + Pf1N1B4_415 0.67 -1.6
485,184 + Pf1N1B4_415 0.67 -1.9
485,184 + Pf1N1B4_415 0.67 -0.5
485,184 + Pf1N1B4_415 0.67 -3.1
485,184 + -0.1
485,185 - Pf1N1B4_415 0.67 -1.6
485,185 - Pf1N1B4_415 0.67 +0.4
485,185 - Pf1N1B4_415 0.67 +0.7
485,187 + +1.5
485,187 + Pf1N1B4_415 0.68 +1.3
485,187 + Pf1N1B4_415 0.68 -0.1
485,187 + Pf1N1B4_415 0.68 -0.6
485,187 + Pf1N1B4_415 0.68 +0.4
485,188 - Pf1N1B4_415 0.68 -1.0
485,188 - Pf1N1B4_415 0.68 +1.5
485,188 - Pf1N1B4_415 0.68 +2.3
485,188 - Pf1N1B4_415 0.68 -0.5
485,188 - Pf1N1B4_415 0.68 +0.7
485,188 - Pf1N1B4_415 0.68 -0.8
485,190 + Pf1N1B4_415 0.68 -1.6
485,190 + Pf1N1B4_415 0.68 +0.2
485,190 + Pf1N1B4_415 0.68 -1.9
485,190 + Pf1N1B4_415 0.68 -0.6
485,191 - -1.6
485,209 + Pf1N1B4_415 0.70 -0.1
485,258 + Pf1N1B4_415 0.76 -1.1
485,259 - Pf1N1B4_415 0.76 -0.1
485,259 - Pf1N1B4_415 0.76 -1.3
485,280 + Pf1N1B4_415 0.78 -0.8
485,280 + Pf1N1B4_415 0.78 -2.2
485,280 + -0.1
485,319 + Pf1N1B4_415 0.83 -2.1
485,430 + -1.6
485,431 - +0.2
485,460 - +0.4
485,460 - -1.1
485,469 + -1.1
485,470 - -1.1
485,630 - Pf1N1B4_416 0.18 +0.2
485,630 - Pf1N1B4_416 0.18 -0.8
485,630 - Pf1N1B4_416 0.18 +0.7
485,630 - Pf1N1B4_416 0.18 -0.1
485,680 + Pf1N1B4_416 0.27 -0.1
485,681 - Pf1N1B4_416 0.27 -1.6
485,724 - Pf1N1B4_416 0.35 -2.1
485,724 - Pf1N1B4_416 0.35 -1.4
485,878 + Pf1N1B4_416 0.62 +0.5
485,879 - Pf1N1B4_416 0.62 +0.3
485,879 - Pf1N1B4_416 0.62 +0.9
485,879 - Pf1N1B4_416 0.62 +0.5
485,879 - Pf1N1B4_416 0.62 -1.4
485,879 - +0.4
485,953 + Pf1N1B4_416 0.76 -1.4
485,953 + Pf1N1B4_416 0.76 +0.3
485,954 - Pf1N1B4_416 0.76 -0.1
485,954 - Pf1N1B4_416 0.76 -0.1
485,954 - Pf1N1B4_416 0.76 -0.6
485,956 + -0.1
485,956 + Pf1N1B4_416 0.76 +1.5
485,957 - Pf1N1B4_416 0.76 +1.6
485,957 - Pf1N1B4_416 0.76 +0.6
485,957 - Pf1N1B4_416 0.76 -0.1
485,957 - Pf1N1B4_416 0.76 -0.1
486,107 + +1.5
486,108 - -1.1
486,141 - -0.6
486,196 + Pf1N1B4_417 0.15 -2.4
486,216 + Pf1N1B4_417 0.18 +0.9
486,216 + Pf1N1B4_417 0.18 +0.4
486,216 + Pf1N1B4_417 0.18 -2.1
486,217 - Pf1N1B4_417 0.18 -1.6
486,226 - Pf1N1B4_417 0.20 -0.5
486,236 + Pf1N1B4_417 0.21 +1.1
486,365 + Pf1N1B4_417 0.43 -1.1
486,365 + Pf1N1B4_417 0.43 -1.1
486,365 + -1.1
486,365 + Pf1N1B4_417 0.43 +0.5
486,374 + Pf1N1B4_417 0.44 +0.9
486,455 + Pf1N1B4_417 0.58 +0.7
486,455 + Pf1N1B4_417 0.58 -0.5
486,456 - Pf1N1B4_417 0.58 -2.1

Or see this region's nucleotide sequence