Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_387

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_386 and Pf1N1B4_387 overlap by 24 nucleotidesPf1N1B4_387 and Pf1N1B4_388 are separated by 120 nucleotidesPf1N1B4_388 and Pf1N1B4_389 overlap by 4 nucleotides Pf1N1B4_386 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 455,166 to 456,605 _386 Pf1N1B4_387 - hypothetical protein, at 456,582 to 456,695 _387 Pf1N1B4_388 - OmpA family protein, at 456,816 to 457,628 _388 Pf1N1B4_389 - Phosphonate ABC transporter phosphate-binding periplasmic component (TC 3.A.1.9.1), at 457,625 to 457,981 _389 Position (kb) 456 457Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 455.611 kb on + strand, within Pf1N1B4_386at 455.611 kb on + strandat 455.611 kb on + strand, within Pf1N1B4_386at 455.611 kb on + strand, within Pf1N1B4_386at 455.611 kb on + strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.612 kb on - strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.677 kb on + strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.678 kb on - strand, within Pf1N1B4_386at 455.701 kb on + strand, within Pf1N1B4_386at 455.750 kb on - strand, within Pf1N1B4_386at 455.750 kb on - strand, within Pf1N1B4_386at 455.753 kb on + strand, within Pf1N1B4_386at 455.754 kb on - strand, within Pf1N1B4_386at 455.754 kb on - strand, within Pf1N1B4_386at 455.754 kb on - strand, within Pf1N1B4_386at 455.844 kb on - strand, within Pf1N1B4_386at 455.844 kb on - strand, within Pf1N1B4_386at 455.989 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strandat 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 455.992 kb on + strand, within Pf1N1B4_386at 456.036 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strandat 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.172 kb on + strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.173 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.245 kb on - strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.403 kb on + strand, within Pf1N1B4_386at 456.404 kb on - strand, within Pf1N1B4_386at 456.404 kb on - strand, within Pf1N1B4_386at 456.538 kb on + strandat 456.538 kb on + strandat 456.539 kb on - strandat 456.539 kb on - strandat 456.578 kb on + strandat 456.578 kb on + strandat 456.578 kb on + strandat 456.578 kb on + strandat 456.579 kb on - strandat 456.579 kb on - strandat 456.579 kb on - strandat 456.579 kb on - strandat 456.586 kb on + strandat 456.586 kb on + strandat 456.586 kb on + strandat 456.586 kb on + strandat 456.634 kb on + strand, within Pf1N1B4_387at 456.634 kb on + strand, within Pf1N1B4_387at 456.634 kb on + strand, within Pf1N1B4_387at 456.635 kb on - strand, within Pf1N1B4_387at 456.665 kb on + strand, within Pf1N1B4_387at 456.673 kb on + strand, within Pf1N1B4_387at 456.703 kb on + strandat 456.703 kb on + strandat 456.703 kb on + strandat 456.703 kb on + strandat 456.944 kb on + strandat 456.944 kb on + strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strandat 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 456.945 kb on - strand, within Pf1N1B4_388at 457.048 kb on + strand, within Pf1N1B4_388at 457.049 kb on - strand, within Pf1N1B4_388at 457.049 kb on - strand, within Pf1N1B4_388at 457.366 kb on + strand, within Pf1N1B4_388at 457.367 kb on - strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.381 kb on + strand, within Pf1N1B4_388at 457.382 kb on - strand, within Pf1N1B4_388at 457.387 kb on + strand, within Pf1N1B4_388at 457.388 kb on - strand, within Pf1N1B4_388at 457.388 kb on - strand, within Pf1N1B4_388at 457.418 kb on - strand, within Pf1N1B4_388at 457.418 kb on - strand, within Pf1N1B4_388at 457.571 kb on - strandat 457.670 kb on - strand, within Pf1N1B4_389

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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455,611 + Pf1N1B4_386 0.31 -0.1
455,611 + +0.7
455,611 + Pf1N1B4_386 0.31 +1.3
455,611 + Pf1N1B4_386 0.31 -0.1
455,611 + Pf1N1B4_386 0.31 +0.7
455,612 - Pf1N1B4_386 0.31 -1.1
455,612 - Pf1N1B4_386 0.31 -1.1
455,612 - Pf1N1B4_386 0.31 -0.1
455,612 - Pf1N1B4_386 0.31 +2.4
455,677 + Pf1N1B4_386 0.35 -1.1
455,677 + Pf1N1B4_386 0.35 -1.1
455,677 + Pf1N1B4_386 0.35 -1.7
455,677 + Pf1N1B4_386 0.35 -0.9
455,677 + Pf1N1B4_386 0.35 +0.5
455,677 + Pf1N1B4_386 0.35 -1.1
455,677 + Pf1N1B4_386 0.35 -1.5
455,677 + Pf1N1B4_386 0.35 -2.1
455,677 + Pf1N1B4_386 0.35 +0.9
455,678 - Pf1N1B4_386 0.36 -0.5
455,678 - Pf1N1B4_386 0.36 -1.7
455,678 - Pf1N1B4_386 0.36 -1.1
455,678 - Pf1N1B4_386 0.36 -2.4
455,678 - Pf1N1B4_386 0.36 -0.5
455,678 - Pf1N1B4_386 0.36 +1.3
455,678 - Pf1N1B4_386 0.36 +1.9
455,678 - Pf1N1B4_386 0.36 +0.9
455,701 + Pf1N1B4_386 0.37 -1.7
455,750 - Pf1N1B4_386 0.41 +0.6
455,750 - Pf1N1B4_386 0.41 -0.1
455,753 + Pf1N1B4_386 0.41 +0.6
455,754 - Pf1N1B4_386 0.41 -2.1
455,754 - Pf1N1B4_386 0.41 -0.7
455,754 - Pf1N1B4_386 0.41 +0.3
455,844 - Pf1N1B4_386 0.47 -0.1
455,844 - Pf1N1B4_386 0.47 -0.7
455,989 + Pf1N1B4_386 0.57 +1.9
455,992 + Pf1N1B4_386 0.57 +0.4
455,992 + Pf1N1B4_386 0.57 +2.7
455,992 + Pf1N1B4_386 0.57 -1.1
455,992 + -1.1
455,992 + Pf1N1B4_386 0.57 -2.7
455,992 + Pf1N1B4_386 0.57 -1.4
455,992 + Pf1N1B4_386 0.57 -0.7
455,992 + Pf1N1B4_386 0.57 -1.4
455,992 + Pf1N1B4_386 0.57 +0.3
455,992 + Pf1N1B4_386 0.57 +0.1
456,036 + Pf1N1B4_386 0.60 -1.7
456,172 + Pf1N1B4_386 0.70 -1.4
456,172 + Pf1N1B4_386 0.70 -2.4
456,172 + Pf1N1B4_386 0.70 -0.1
456,172 + -0.1
456,172 + Pf1N1B4_386 0.70 +0.5
456,172 + Pf1N1B4_386 0.70 -2.1
456,172 + Pf1N1B4_386 0.70 -0.7
456,173 - Pf1N1B4_386 0.70 -0.3
456,173 - Pf1N1B4_386 0.70 -0.1
456,173 - Pf1N1B4_386 0.70 -0.1
456,173 - Pf1N1B4_386 0.70 +1.5
456,173 - Pf1N1B4_386 0.70 -0.5
456,245 - Pf1N1B4_386 0.75 -0.7
456,245 - Pf1N1B4_386 0.75 -0.1
456,245 - Pf1N1B4_386 0.75 -1.1
456,245 - Pf1N1B4_386 0.75 -1.7
456,403 + Pf1N1B4_386 0.86 -1.1
456,403 + Pf1N1B4_386 0.86 -1.7
456,403 + Pf1N1B4_386 0.86 -0.5
456,403 + Pf1N1B4_386 0.86 -0.5
456,403 + Pf1N1B4_386 0.86 +0.3
456,403 + Pf1N1B4_386 0.86 +0.1
456,404 - Pf1N1B4_386 0.86 -1.1
456,404 - Pf1N1B4_386 0.86 +0.5
456,538 + -1.1
456,538 + +0.6
456,539 - -1.7
456,539 - +0.4
456,578 + -0.1
456,578 + -0.8
456,578 + -2.9
456,578 + -0.3
456,579 - +1.3
456,579 - -1.1
456,579 - +2.3
456,579 - -1.1
456,586 + -0.1
456,586 + +0.5
456,586 + -0.3
456,586 + -0.1
456,634 + Pf1N1B4_387 0.46 -0.1
456,634 + Pf1N1B4_387 0.46 -0.1
456,634 + Pf1N1B4_387 0.46 -1.1
456,635 - Pf1N1B4_387 0.46 -0.1
456,665 + Pf1N1B4_387 0.73 -2.4
456,673 + Pf1N1B4_387 0.80 -1.7
456,703 + -2.7
456,703 + +0.2
456,703 + -1.1
456,703 + +1.3
456,944 + -1.1
456,944 + Pf1N1B4_388 0.16 -1.1
456,945 - Pf1N1B4_388 0.16 -1.7
456,945 - Pf1N1B4_388 0.16 -0.7
456,945 - Pf1N1B4_388 0.16 -2.4
456,945 - Pf1N1B4_388 0.16 -2.8
456,945 - -0.1
456,945 - Pf1N1B4_388 0.16 -2.4
456,945 - Pf1N1B4_388 0.16 -3.4
456,945 - Pf1N1B4_388 0.16 -1.1
457,048 + Pf1N1B4_388 0.29 -0.7
457,049 - Pf1N1B4_388 0.29 -1.5
457,049 - Pf1N1B4_388 0.29 -1.3
457,366 + Pf1N1B4_388 0.68 -0.7
457,367 - Pf1N1B4_388 0.68 -2.4
457,381 + Pf1N1B4_388 0.69 -1.1
457,381 + Pf1N1B4_388 0.69 -1.1
457,381 + Pf1N1B4_388 0.69 -0.1
457,381 + Pf1N1B4_388 0.69 +0.7
457,381 + Pf1N1B4_388 0.69 -2.1
457,382 - Pf1N1B4_388 0.70 -1.7
457,387 + Pf1N1B4_388 0.70 -1.1
457,388 - Pf1N1B4_388 0.70 -0.8
457,388 - Pf1N1B4_388 0.70 -2.4
457,418 - Pf1N1B4_388 0.74 -2.4
457,418 - Pf1N1B4_388 0.74 -2.4
457,571 - +0.5
457,670 - Pf1N1B4_389 0.13 -2.4

Or see this region's nucleotide sequence