Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3683

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3682 and Pf1N1B4_3683 are separated by 110 nucleotidesPf1N1B4_3683 and Pf1N1B4_3684 are separated by 194 nucleotides Pf1N1B4_3682 - Dihydrolipoamide succinyltransferase component (E2) of 2-oxoglutarate dehydrogenase complex (EC 2.3.1.61), at 4,091,097 to 4,092,314 _3682 Pf1N1B4_3683 - Dihydrolipoamide dehydrogenase of 2-oxoglutarate dehydrogenase (EC 1.8.1.4), at 4,092,425 to 4,093,861 _3683 Pf1N1B4_3684 - Succinyl-CoA ligase [ADP-forming] beta chain (EC 6.2.1.5), at 4,094,056 to 4,095,222 _3684 Position (kb) 4092 4093 4094Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 4093.867 kb on + strandat 4093.867 kb on + strandat 4093.867 kb on + strandat 4093.867 kb on + strandat 4093.867 kb on + strandat 4093.867 kb on + strandat 4093.867 kb on + strandat 4093.948 kb on + strandat 4093.973 kb on + strandat 4093.973 kb on + strandat 4094.033 kb on - strandat 4094.033 kb on - strandat 4094.036 kb on + strandat 4094.051 kb on + strandat 4094.051 kb on + strandat 4094.051 kb on + strandat 4094.051 kb on + strandat 4094.052 kb on - strandat 4094.052 kb on - strandat 4094.052 kb on - strandat 4094.072 kb on - strandat 4094.129 kb on + strandat 4094.129 kb on + strandat 4094.234 kb on + strand, within Pf1N1B4_3684at 4094.305 kb on + strandat 4094.371 kb on - strand, within Pf1N1B4_3684at 4094.380 kb on + strandat 4094.381 kb on - strand, within Pf1N1B4_3684at 4094.600 kb on + strandat 4094.725 kb on + strand, within Pf1N1B4_3684at 4094.737 kb on - strand, within Pf1N1B4_3684at 4094.809 kb on + strand, within Pf1N1B4_3684at 4094.809 kb on + strand, within Pf1N1B4_3684at 4094.809 kb on + strand, within Pf1N1B4_3684at 4094.809 kb on + strand, within Pf1N1B4_3684at 4094.809 kb on + strand, within Pf1N1B4_3684at 4094.809 kb on + strandat 4094.809 kb on + strand, within Pf1N1B4_3684at 4094.809 kb on + strand, within Pf1N1B4_3684at 4094.810 kb on - strand, within Pf1N1B4_3684at 4094.810 kb on - strand, within Pf1N1B4_3684at 4094.810 kb on - strand, within Pf1N1B4_3684at 4094.810 kb on - strand, within Pf1N1B4_3684at 4094.810 kb on - strandat 4094.810 kb on - strand, within Pf1N1B4_3684at 4094.813 kb on + strand, within Pf1N1B4_3684at 4094.813 kb on + strand, within Pf1N1B4_3684at 4094.813 kb on + strand, within Pf1N1B4_3684at 4094.813 kb on + strandat 4094.813 kb on + strand, within Pf1N1B4_3684at 4094.814 kb on - strand, within Pf1N1B4_3684at 4094.814 kb on - strand, within Pf1N1B4_3684at 4094.814 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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4,093,867 + +3.0
4,093,867 + +2.7
4,093,867 + +1.8
4,093,867 + +2.2
4,093,867 + +1.8
4,093,867 + +3.7
4,093,867 + +2.2
4,093,948 + +3.4
4,093,973 + +2.2
4,093,973 + +1.8
4,094,033 - +2.3
4,094,033 - +2.2
4,094,036 + +2.2
4,094,051 + -0.5
4,094,051 + +1.6
4,094,051 + +1.8
4,094,051 + +2.3
4,094,052 - +3.5
4,094,052 - +4.8
4,094,052 - +3.1
4,094,072 - +1.8
4,094,129 + +3.2
4,094,129 + +0.2
4,094,234 + Pf1N1B4_3684 0.15 +3.0
4,094,305 + +1.8
4,094,371 - Pf1N1B4_3684 0.27 +2.4
4,094,380 + +3.2
4,094,381 - Pf1N1B4_3684 0.28 +1.2
4,094,600 + -0.2
4,094,725 + Pf1N1B4_3684 0.57 +0.7
4,094,737 - Pf1N1B4_3684 0.58 +1.2
4,094,809 + Pf1N1B4_3684 0.65 +2.4
4,094,809 + Pf1N1B4_3684 0.65 -0.2
4,094,809 + Pf1N1B4_3684 0.65 +1.6
4,094,809 + Pf1N1B4_3684 0.65 -1.2
4,094,809 + Pf1N1B4_3684 0.65 +2.5
4,094,809 + -1.2
4,094,809 + Pf1N1B4_3684 0.65 +3.2
4,094,809 + Pf1N1B4_3684 0.65 +2.8
4,094,810 - Pf1N1B4_3684 0.65 +1.0
4,094,810 - Pf1N1B4_3684 0.65 +1.8
4,094,810 - Pf1N1B4_3684 0.65 -0.2
4,094,810 - Pf1N1B4_3684 0.65 +3.8
4,094,810 - +2.2
4,094,810 - Pf1N1B4_3684 0.65 +0.6
4,094,813 + Pf1N1B4_3684 0.65 +2.6
4,094,813 + Pf1N1B4_3684 0.65 +2.8
4,094,813 + Pf1N1B4_3684 0.65 +1.6
4,094,813 + +2.6
4,094,813 + Pf1N1B4_3684 0.65 +3.4
4,094,814 - Pf1N1B4_3684 0.65 +1.6
4,094,814 - Pf1N1B4_3684 0.65 -2.2
4,094,814 - +2.2

Or see this region's nucleotide sequence