Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3675 and Pf1N1B4_3676 are separated by 770 nucleotides Pf1N1B4_3676 and Pf1N1B4_3677 are separated by 479 nucleotides Pf1N1B4_3677 and Pf1N1B4_3678 overlap by 7 nucleotides
Pf1N1B4_3675 - Mobile element protein, at 4,081,357 to 4,082,298
_3675
Pf1N1B4_3676 - Citrate synthase (si) (EC 2.3.3.1), at 4,083,069 to 4,084,355
_3676
Pf1N1B4_3677 - Succinate dehydrogenase cytochrome b-556 subunit, at 4,084,835 to 4,085,092
_3677
Pf1N1B4_3678 - Succinate dehydrogenase hydrophobic membrane anchor protein, at 4,085,086 to 4,085,454
_3678
Position (kb)
4083
4084
4085 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4082.316 kb on + strand at 4082.316 kb on + strand at 4082.316 kb on + strand at 4082.316 kb on + strand at 4082.316 kb on + strand at 4082.316 kb on + strand at 4082.915 kb on + strand at 4082.930 kb on + strand at 4082.930 kb on + strand at 4082.955 kb on + strand at 4082.955 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.959 kb on + strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4082.960 kb on - strand at 4083.013 kb on - strand at 4083.019 kb on + strand at 4084.178 kb on + strand, within Pf1N1B4_3676 at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.366 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.370 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.417 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.419 kb on - strand at 4084.427 kb on - strand at 4084.506 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.515 kb on - strand at 4084.535 kb on + strand at 4084.535 kb on + strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.536 kb on - strand at 4084.563 kb on + strand at 4084.563 kb on + strand at 4084.571 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand at 4084.579 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 4,082,316 + -1.2 4,082,316 + -1.2 4,082,316 + -0.5 4,082,316 + -1.4 4,082,316 + -0.8 4,082,316 + +0.4 4,082,915 + -0.8 4,082,930 + -1.2 4,082,930 + +1.1 4,082,955 + -1.2 4,082,955 + +0.6 4,082,959 + -1.2 4,082,959 + +0.1 4,082,959 + +0.1 4,082,959 + +0.2 4,082,959 + -0.9 4,082,959 + +1.1 4,082,959 + +2.2 4,082,959 + +0.8 4,082,959 + -2.2 4,082,959 + +2.0 4,082,959 + -0.2 4,082,959 + -1.8 4,082,959 + -1.6 4,082,959 + +3.3 4,082,959 + +2.2 4,082,959 + +1.1 4,082,959 + +0.2 4,082,959 + -1.2 4,082,959 + +0.6 4,082,959 + -2.9 4,082,959 + -0.2 4,082,959 + -2.8 4,082,960 - +0.8 4,082,960 - +0.2 4,082,960 - +1.8 4,082,960 - -2.0 4,082,960 - -0.6 4,082,960 - +0.8 4,082,960 - -2.8 4,082,960 - -0.3 4,082,960 - +0.3 4,082,960 - -2.2 4,082,960 - -0.2 4,082,960 - +1.4 4,082,960 - +1.6 4,082,960 - +0.2 4,082,960 - -1.0 4,082,960 - +0.4 4,082,960 - -1.8 4,082,960 - -0.4 4,082,960 - -1.2 4,082,960 - +2.6 4,082,960 - +2.4 4,082,960 - -1.2 4,082,960 - -1.8 4,082,960 - +0.2 4,082,960 - +0.6 4,083,013 - -0.4 4,083,019 + -1.2 4,084,178 + Pf1N1B4_3676 0.86 -1.0 4,084,366 - +3.0 4,084,366 - +2.2 4,084,366 - +0.4 4,084,366 - +1.4 4,084,366 - +2.0 4,084,366 - +1.3 4,084,366 - +3.2 4,084,370 - +1.8 4,084,370 - +3.5 4,084,370 - +1.5 4,084,370 - -0.2 4,084,370 - +1.9 4,084,370 - +1.9 4,084,370 - +0.9 4,084,370 - +2.2 4,084,370 - +2.3 4,084,370 - +1.9 4,084,370 - +0.8 4,084,370 - +2.5 4,084,370 - -0.2 4,084,370 - +0.1 4,084,370 - +2.9 4,084,370 - +0.2 4,084,417 - +1.6 4,084,417 - +3.3 4,084,417 - +2.7 4,084,417 - -0.2 4,084,417 - +0.8 4,084,417 - +1.8 4,084,419 - +0.7 4,084,419 - +1.9 4,084,419 - +1.8 4,084,419 - -0.2 4,084,419 - +1.4 4,084,419 - +1.7 4,084,419 - +1.6 4,084,427 - +0.2 4,084,506 - +0.9 4,084,515 - -1.8 4,084,515 - +1.0 4,084,515 - +1.4 4,084,515 - +1.2 4,084,515 - +1.8 4,084,535 + -0.5 4,084,535 + -1.2 4,084,536 - +0.7 4,084,536 - +2.3 4,084,536 - +2.5 4,084,536 - +0.8 4,084,536 - -0.2 4,084,563 + +2.3 4,084,563 + +2.8 4,084,571 + +2.9 4,084,579 + -0.2 4,084,579 + +1.8 4,084,579 + +1.9 4,084,579 + +1.3 4,084,579 + +2.4
Or see this region's nucleotide sequence