Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_3578 and Pf1N1B4_3579 overlap by 4 nucleotides Pf1N1B4_3579 and Pf1N1B4_3580 overlap by 4 nucleotides
Pf1N1B4_3578 - Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45), at 3,988,897 to 3,989,979
_3578
Pf1N1B4_3579 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 3,989,976 to 3,990,536
_3579
Pf1N1B4_3580 - methyltransferase, putative, at 3,990,533 to 3,991,759
_3580
Position (kb)
3989
3990
3991 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3989.124 kb on - strand, within Pf1N1B4_3578 at 3989.219 kb on - strand, within Pf1N1B4_3578 at 3989.378 kb on - strand, within Pf1N1B4_3578 at 3989.420 kb on - strand, within Pf1N1B4_3578 at 3989.450 kb on - strand, within Pf1N1B4_3578 at 3989.576 kb on + strand, within Pf1N1B4_3578 at 3989.577 kb on - strand, within Pf1N1B4_3578 at 3989.595 kb on - strand, within Pf1N1B4_3578 at 3990.207 kb on - strand, within Pf1N1B4_3579 at 3990.378 kb on + strand, within Pf1N1B4_3579 at 3990.396 kb on + strand, within Pf1N1B4_3579 at 3990.532 kb on + strand at 3990.532 kb on + strand at 3990.608 kb on + strand at 3990.609 kb on - strand at 3990.609 kb on - strand at 3990.702 kb on - strand, within Pf1N1B4_3580 at 3990.786 kb on - strand, within Pf1N1B4_3580 at 3990.873 kb on - strand, within Pf1N1B4_3580 at 3990.873 kb on - strand, within Pf1N1B4_3580 at 3991.190 kb on + strand, within Pf1N1B4_3580 at 3991.190 kb on + strand, within Pf1N1B4_3580 at 3991.190 kb on + strand, within Pf1N1B4_3580 at 3991.190 kb on + strand, within Pf1N1B4_3580 at 3991.191 kb on - strand, within Pf1N1B4_3580 at 3991.417 kb on + strand, within Pf1N1B4_3580 at 3991.417 kb on + strand, within Pf1N1B4_3580 at 3991.417 kb on + strand, within Pf1N1B4_3580 at 3991.418 kb on - strand, within Pf1N1B4_3580 at 3991.517 kb on + strand, within Pf1N1B4_3580
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 3,989,124 - Pf1N1B4_3578 0.21 -0.5 3,989,219 - Pf1N1B4_3578 0.30 +0.6 3,989,378 - Pf1N1B4_3578 0.44 -0.8 3,989,420 - Pf1N1B4_3578 0.48 +0.9 3,989,450 - Pf1N1B4_3578 0.51 -2.4 3,989,576 + Pf1N1B4_3578 0.63 -0.8 3,989,577 - Pf1N1B4_3578 0.63 -1.1 3,989,595 - Pf1N1B4_3578 0.64 +0.3 3,990,207 - Pf1N1B4_3579 0.41 +2.7 3,990,378 + Pf1N1B4_3579 0.72 -2.4 3,990,396 + Pf1N1B4_3579 0.75 +0.2 3,990,532 + -0.8 3,990,532 + -0.1 3,990,608 + +0.1 3,990,609 - +2.7 3,990,609 - -2.1 3,990,702 - Pf1N1B4_3580 0.14 +3.7 3,990,786 - Pf1N1B4_3580 0.21 +0.5 3,990,873 - Pf1N1B4_3580 0.28 +0.1 3,990,873 - Pf1N1B4_3580 0.28 -1.7 3,991,190 + Pf1N1B4_3580 0.54 +0.8 3,991,190 + Pf1N1B4_3580 0.54 -1.7 3,991,190 + Pf1N1B4_3580 0.54 -2.9 3,991,190 + Pf1N1B4_3580 0.54 -1.7 3,991,191 - Pf1N1B4_3580 0.54 -1.7 3,991,417 + Pf1N1B4_3580 0.72 +0.9 3,991,417 + Pf1N1B4_3580 0.72 -2.1 3,991,417 + Pf1N1B4_3580 0.72 +0.3 3,991,418 - Pf1N1B4_3580 0.72 +0.6 3,991,517 + Pf1N1B4_3580 0.80 +0.5
Or see this region's nucleotide sequence