Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3579

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3578 and Pf1N1B4_3579 overlap by 4 nucleotidesPf1N1B4_3579 and Pf1N1B4_3580 overlap by 4 nucleotides Pf1N1B4_3578 - Similar to CDP-glucose 4,6-dehydratase (EC 4.2.1.45), at 3,988,897 to 3,989,979 _3578 Pf1N1B4_3579 - dTDP-4-dehydrorhamnose 3,5-epimerase (EC 5.1.3.13), at 3,989,976 to 3,990,536 _3579 Pf1N1B4_3580 - methyltransferase, putative, at 3,990,533 to 3,991,759 _3580 Position (kb) 3989 3990 3991Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3989.124 kb on - strand, within Pf1N1B4_3578at 3989.219 kb on - strand, within Pf1N1B4_3578at 3989.378 kb on - strand, within Pf1N1B4_3578at 3989.420 kb on - strand, within Pf1N1B4_3578at 3989.450 kb on - strand, within Pf1N1B4_3578at 3989.576 kb on + strand, within Pf1N1B4_3578at 3989.577 kb on - strand, within Pf1N1B4_3578at 3989.595 kb on - strand, within Pf1N1B4_3578at 3990.207 kb on - strand, within Pf1N1B4_3579at 3990.378 kb on + strand, within Pf1N1B4_3579at 3990.396 kb on + strand, within Pf1N1B4_3579at 3990.532 kb on + strandat 3990.532 kb on + strandat 3990.608 kb on + strandat 3990.609 kb on - strandat 3990.609 kb on - strandat 3990.702 kb on - strand, within Pf1N1B4_3580at 3990.786 kb on - strand, within Pf1N1B4_3580at 3990.873 kb on - strand, within Pf1N1B4_3580at 3990.873 kb on - strand, within Pf1N1B4_3580at 3991.190 kb on + strand, within Pf1N1B4_3580at 3991.190 kb on + strand, within Pf1N1B4_3580at 3991.190 kb on + strand, within Pf1N1B4_3580at 3991.190 kb on + strand, within Pf1N1B4_3580at 3991.191 kb on - strand, within Pf1N1B4_3580at 3991.417 kb on + strand, within Pf1N1B4_3580at 3991.417 kb on + strand, within Pf1N1B4_3580at 3991.417 kb on + strand, within Pf1N1B4_3580at 3991.418 kb on - strand, within Pf1N1B4_3580at 3991.517 kb on + strand, within Pf1N1B4_3580

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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3,989,124 - Pf1N1B4_3578 0.21 -0.5
3,989,219 - Pf1N1B4_3578 0.30 +0.6
3,989,378 - Pf1N1B4_3578 0.44 -0.8
3,989,420 - Pf1N1B4_3578 0.48 +0.9
3,989,450 - Pf1N1B4_3578 0.51 -2.4
3,989,576 + Pf1N1B4_3578 0.63 -0.8
3,989,577 - Pf1N1B4_3578 0.63 -1.1
3,989,595 - Pf1N1B4_3578 0.64 +0.3
3,990,207 - Pf1N1B4_3579 0.41 +2.7
3,990,378 + Pf1N1B4_3579 0.72 -2.4
3,990,396 + Pf1N1B4_3579 0.75 +0.2
3,990,532 + -0.8
3,990,532 + -0.1
3,990,608 + +0.1
3,990,609 - +2.7
3,990,609 - -2.1
3,990,702 - Pf1N1B4_3580 0.14 +3.7
3,990,786 - Pf1N1B4_3580 0.21 +0.5
3,990,873 - Pf1N1B4_3580 0.28 +0.1
3,990,873 - Pf1N1B4_3580 0.28 -1.7
3,991,190 + Pf1N1B4_3580 0.54 +0.8
3,991,190 + Pf1N1B4_3580 0.54 -1.7
3,991,190 + Pf1N1B4_3580 0.54 -2.9
3,991,190 + Pf1N1B4_3580 0.54 -1.7
3,991,191 - Pf1N1B4_3580 0.54 -1.7
3,991,417 + Pf1N1B4_3580 0.72 +0.9
3,991,417 + Pf1N1B4_3580 0.72 -2.1
3,991,417 + Pf1N1B4_3580 0.72 +0.3
3,991,418 - Pf1N1B4_3580 0.72 +0.6
3,991,517 + Pf1N1B4_3580 0.80 +0.5

Or see this region's nucleotide sequence