Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_3247

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_3246 and Pf1N1B4_3247 are separated by 3 nucleotidesPf1N1B4_3247 and Pf1N1B4_3248 are separated by 265 nucleotides Pf1N1B4_3246 - RND efflux system, inner membrane transporter CmeB, at 3,633,755 to 3,636,916 _3246 Pf1N1B4_3247 - Multidrug efflux RND membrane fusion protein MexC, at 3,636,920 to 3,638,077 _3247 Pf1N1B4_3248 - Transcription repressor of multidrug efflux pump acrAB operon, TetR (AcrR) family, at 3,638,343 to 3,638,975 _3248 Position (kb) 3636 3637 3638 3639Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6 7 8at 3636.791 kb on - strandat 3636.947 kb on - strandat 3636.947 kb on - strandat 3636.947 kb on - strandat 3636.950 kb on - strandat 3636.950 kb on - strandat 3636.950 kb on - strandat 3636.950 kb on - strandat 3636.950 kb on - strandat 3636.950 kb on - strandat 3637.492 kb on - strand, within Pf1N1B4_3247at 3637.492 kb on - strand, within Pf1N1B4_3247at 3637.600 kb on - strandat 3637.786 kb on - strand, within Pf1N1B4_3247at 3638.154 kb on - strandat 3638.210 kb on - strandat 3638.249 kb on + strandat 3638.249 kb on + strandat 3638.299 kb on + strandat 3638.337 kb on - strandat 3638.415 kb on + strand, within Pf1N1B4_3248at 3638.415 kb on + strand, within Pf1N1B4_3248at 3638.416 kb on - strand, within Pf1N1B4_3248at 3638.487 kb on + strand, within Pf1N1B4_3248at 3638.487 kb on + strand, within Pf1N1B4_3248at 3638.488 kb on - strand, within Pf1N1B4_3248at 3638.504 kb on + strand, within Pf1N1B4_3248at 3638.687 kb on + strand, within Pf1N1B4_3248at 3638.687 kb on + strand, within Pf1N1B4_3248at 3638.687 kb on + strand, within Pf1N1B4_3248at 3638.688 kb on - strand, within Pf1N1B4_3248at 3638.688 kb on - strand, within Pf1N1B4_3248at 3638.850 kb on + strand, within Pf1N1B4_3248at 3638.850 kb on + strand, within Pf1N1B4_3248at 3638.851 kb on - strand, within Pf1N1B4_3248at 3638.851 kb on - strand, within Pf1N1B4_3248at 3638.942 kb on + strandat 3638.987 kb on + strandat 3638.988 kb on - strandat 3639.050 kb on + strandat 3639.050 kb on + strandat 3639.050 kb on + strandat 3639.051 kb on - strandat 3639.064 kb on + strandat 3639.064 kb on + strandat 3639.064 kb on + strandat 3639.064 kb on + strandat 3639.064 kb on + strandat 3639.064 kb on + strandat 3639.064 kb on + strandat 3639.064 kb on + strandat 3639.065 kb on - strandat 3639.065 kb on - strandat 3639.065 kb on - strandat 3639.065 kb on - strandat 3639.065 kb on - strandat 3639.065 kb on - strandat 3639.066 kb on + strandat 3639.066 kb on + strandat 3639.066 kb on + strandat 3639.066 kb on + strandat 3639.066 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.068 kb on + strandat 3639.069 kb on - strandat 3639.069 kb on - strandat 3639.069 kb on - strandat 3639.069 kb on - strandat 3639.069 kb on - strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.072 kb on + strandat 3639.073 kb on - strandat 3639.073 kb on - strandat 3639.073 kb on - strandat 3639.073 kb on - strandat 3639.073 kb on - strandat 3639.073 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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3,636,791 - -1.9
3,636,947 - -3.1
3,636,947 - -2.7
3,636,947 - -1.5
3,636,950 - -2.2
3,636,950 - -2.5
3,636,950 - -1.9
3,636,950 - -3.8
3,636,950 - -0.3
3,636,950 - -1.5
3,637,492 - Pf1N1B4_3247 0.49 -1.5
3,637,492 - Pf1N1B4_3247 0.49 +0.7
3,637,600 - -1.5
3,637,786 - Pf1N1B4_3247 0.75 -2.7
3,638,154 - +1.4
3,638,210 - +6.2
3,638,249 + -1.9
3,638,249 + +0.1
3,638,299 + -1.5
3,638,337 - +7.5
3,638,415 + Pf1N1B4_3248 0.11 -0.1
3,638,415 + Pf1N1B4_3248 0.11 +0.7
3,638,416 - Pf1N1B4_3248 0.12 +7.5
3,638,487 + Pf1N1B4_3248 0.23 +1.8
3,638,487 + Pf1N1B4_3248 0.23 +2.1
3,638,488 - Pf1N1B4_3248 0.23 +7.9
3,638,504 + Pf1N1B4_3248 0.25 +3.9
3,638,687 + Pf1N1B4_3248 0.54 -0.3
3,638,687 + Pf1N1B4_3248 0.54 +4.1
3,638,687 + Pf1N1B4_3248 0.54 -2.2
3,638,688 - Pf1N1B4_3248 0.55 +4.4
3,638,688 - Pf1N1B4_3248 0.55 +7.4
3,638,850 + Pf1N1B4_3248 0.80 +3.5
3,638,850 + Pf1N1B4_3248 0.80 +2.9
3,638,851 - Pf1N1B4_3248 0.80 +7.0
3,638,851 - Pf1N1B4_3248 0.80 +5.7
3,638,942 + +5.9
3,638,987 + -0.5
3,638,988 - -0.5
3,639,050 + -1.9
3,639,050 + +0.1
3,639,050 + -0.9
3,639,051 - -0.3
3,639,064 + -2.2
3,639,064 + -0.9
3,639,064 + -1.5
3,639,064 + -1.9
3,639,064 + -1.5
3,639,064 + -0.9
3,639,064 + -1.9
3,639,064 + +1.1
3,639,065 - +0.1
3,639,065 - -1.9
3,639,065 - -0.9
3,639,065 - +1.1
3,639,065 - -3.2
3,639,065 - -2.9
3,639,066 + -2.2
3,639,066 + -1.5
3,639,066 + -1.5
3,639,066 + -1.5
3,639,066 + -1.5
3,639,068 + +0.1
3,639,068 + -2.5
3,639,068 + -3.1
3,639,068 + -1.5
3,639,068 + +0.1
3,639,068 + +0.4
3,639,068 + -1.5
3,639,068 + +0.1
3,639,068 + -1.9
3,639,068 + -1.5
3,639,068 + -1.9
3,639,068 + -3.2
3,639,068 + -1.5
3,639,068 + +0.1
3,639,068 + -2.5
3,639,068 + -0.9
3,639,068 + -1.9
3,639,068 + -1.9
3,639,069 - +0.1
3,639,069 - -0.9
3,639,069 - -1.5
3,639,069 - -1.5
3,639,069 - -3.6
3,639,072 + +0.1
3,639,072 + -2.7
3,639,072 + -0.9
3,639,072 + -0.9
3,639,072 + -2.2
3,639,072 + -2.2
3,639,072 + -0.9
3,639,072 + +0.1
3,639,072 + +1.1
3,639,072 + -2.2
3,639,072 + -1.5
3,639,073 - +0.1
3,639,073 - -0.9
3,639,073 - -1.5
3,639,073 - +1.1
3,639,073 - -0.9
3,639,073 - -0.9

Or see this region's nucleotide sequence