Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_2713 and Pf1N1B4_2714 are separated by 139 nucleotides Pf1N1B4_2714 and Pf1N1B4_2715 are separated by 27 nucleotides Pf1N1B4_2715 and Pf1N1B4_2716 are separated by 32 nucleotides
Pf1N1B4_2713 - FIG00955339: hypothetical protein, at 3,051,182 to 3,051,511
_2713
Pf1N1B4_2714 - FOG: TPR repeat, SEL1 subfamily, at 3,051,651 to 3,052,205
_2714
Pf1N1B4_2715 - hypothetical protein, at 3,052,233 to 3,052,397
_2715
Pf1N1B4_2716 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 3,052,430 to 3,053,713
_2716
Position (kb)
3052
3053 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 3051.239 kb on + strand, within Pf1N1B4_2713 at 3051.240 kb on - strand, within Pf1N1B4_2713 at 3051.249 kb on - strand at 3051.249 kb on - strand, within Pf1N1B4_2713 at 3051.249 kb on - strand, within Pf1N1B4_2713 at 3051.263 kb on + strand, within Pf1N1B4_2713 at 3051.264 kb on - strand, within Pf1N1B4_2713 at 3051.264 kb on - strand, within Pf1N1B4_2713 at 3051.565 kb on + strand at 3051.566 kb on - strand at 3051.566 kb on - strand at 3051.566 kb on - strand at 3051.566 kb on - strand at 3051.706 kb on + strand at 3051.706 kb on + strand at 3051.706 kb on + strand at 3051.706 kb on + strand at 3051.706 kb on + strand at 3051.706 kb on + strand at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.707 kb on - strand, within Pf1N1B4_2714 at 3051.711 kb on - strand, within Pf1N1B4_2714 at 3052.218 kb on - strand at 3052.274 kb on - strand, within Pf1N1B4_2715 at 3052.274 kb on - strand, within Pf1N1B4_2715 at 3052.274 kb on - strand, within Pf1N1B4_2715 at 3052.274 kb on - strand, within Pf1N1B4_2715 at 3052.274 kb on - strand, within Pf1N1B4_2715 at 3052.274 kb on - strand, within Pf1N1B4_2715 at 3052.290 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.327 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.329 kb on - strand, within Pf1N1B4_2715 at 3052.351 kb on - strand, within Pf1N1B4_2715 at 3052.351 kb on - strand, within Pf1N1B4_2715 at 3052.385 kb on - strand at 3052.432 kb on - strand at 3052.432 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 3,051,239 + Pf1N1B4_2713 0.17 -2.5 3,051,240 - Pf1N1B4_2713 0.18 -1.2 3,051,249 - +3.8 3,051,249 - Pf1N1B4_2713 0.20 -0.2 3,051,249 - Pf1N1B4_2713 0.20 +0.5 3,051,263 + Pf1N1B4_2713 0.25 -1.2 3,051,264 - Pf1N1B4_2713 0.25 +1.3 3,051,264 - Pf1N1B4_2713 0.25 +0.6 3,051,565 + +0.3 3,051,566 - +0.2 3,051,566 - -0.7 3,051,566 - -2.2 3,051,566 - -0.1 3,051,706 + +0.1 3,051,706 + +0.7 3,051,706 + -0.0 3,051,706 + -2.0 3,051,706 + -0.7 3,051,706 + -1.0 3,051,707 - Pf1N1B4_2714 0.10 +1.3 3,051,707 - Pf1N1B4_2714 0.10 -2.2 3,051,707 - Pf1N1B4_2714 0.10 +2.2 3,051,707 - Pf1N1B4_2714 0.10 +0.7 3,051,707 - Pf1N1B4_2714 0.10 -0.5 3,051,707 - Pf1N1B4_2714 0.10 +0.1 3,051,707 - Pf1N1B4_2714 0.10 +0.8 3,051,707 - Pf1N1B4_2714 0.10 -0.4 3,051,707 - Pf1N1B4_2714 0.10 -0.7 3,051,711 - Pf1N1B4_2714 0.11 +1.3 3,052,218 - +0.7 3,052,274 - Pf1N1B4_2715 0.25 +0.9 3,052,274 - Pf1N1B4_2715 0.25 +1.2 3,052,274 - Pf1N1B4_2715 0.25 +0.5 3,052,274 - Pf1N1B4_2715 0.25 -0.3 3,052,274 - Pf1N1B4_2715 0.25 -0.5 3,052,274 - Pf1N1B4_2715 0.25 -1.2 3,052,290 - Pf1N1B4_2715 0.35 -1.1 3,052,327 - Pf1N1B4_2715 0.57 +3.7 3,052,327 - Pf1N1B4_2715 0.57 +0.3 3,052,327 - Pf1N1B4_2715 0.57 -0.2 3,052,327 - Pf1N1B4_2715 0.57 -0.7 3,052,327 - Pf1N1B4_2715 0.57 +1.0 3,052,327 - Pf1N1B4_2715 0.57 +0.8 3,052,327 - Pf1N1B4_2715 0.57 -0.7 3,052,327 - Pf1N1B4_2715 0.57 -1.2 3,052,329 - Pf1N1B4_2715 0.58 -2.0 3,052,329 - Pf1N1B4_2715 0.58 +0.5 3,052,329 - Pf1N1B4_2715 0.58 +1.4 3,052,329 - Pf1N1B4_2715 0.58 +2.1 3,052,329 - Pf1N1B4_2715 0.58 +1.4 3,052,329 - Pf1N1B4_2715 0.58 +0.1 3,052,329 - Pf1N1B4_2715 0.58 +1.9 3,052,329 - Pf1N1B4_2715 0.58 +0.1 3,052,351 - Pf1N1B4_2715 0.72 +0.3 3,052,351 - Pf1N1B4_2715 0.72 +0.6 3,052,385 - -1.7 3,052,432 - -0.7 3,052,432 - -0.7
Or see this region's nucleotide sequence