Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_2558

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_2557 and Pf1N1B4_2558 are separated by 33 nucleotidesPf1N1B4_2558 and Pf1N1B4_2559 are separated by 135 nucleotides Pf1N1B4_2557 - 2-nitropropane dioxygenase (EC 1.13.11.32), at 2,899,322 to 2,900,290 _2557 Pf1N1B4_2558 - Protoporphyrinogen IX oxidase, novel form, HemJ (EC 1.3.-.-), at 2,900,324 to 2,900,755 _2558 Pf1N1B4_2559 - N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38), at 2,900,891 to 2,901,925 _2559 Position (kb) 2900 2901Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2899.587 kb on - strand, within Pf1N1B4_2557at 2899.607 kb on - strand, within Pf1N1B4_2557at 2899.648 kb on + strand, within Pf1N1B4_2557at 2899.649 kb on - strand, within Pf1N1B4_2557at 2899.649 kb on - strand, within Pf1N1B4_2557at 2899.650 kb on + strand, within Pf1N1B4_2557at 2899.650 kb on + strand, within Pf1N1B4_2557at 2899.650 kb on + strand, within Pf1N1B4_2557at 2899.650 kb on + strand, within Pf1N1B4_2557at 2899.651 kb on - strand, within Pf1N1B4_2557at 2899.651 kb on - strand, within Pf1N1B4_2557at 2899.941 kb on + strand, within Pf1N1B4_2557at 2899.941 kb on + strand, within Pf1N1B4_2557at 2899.941 kb on + strand, within Pf1N1B4_2557at 2900.000 kb on + strand, within Pf1N1B4_2557at 2900.076 kb on + strand, within Pf1N1B4_2557at 2900.076 kb on + strandat 2900.180 kb on + strand, within Pf1N1B4_2557at 2900.224 kb on + strandat 2900.225 kb on - strandat 2900.243 kb on + strandat 2900.244 kb on - strandat 2900.244 kb on - strandat 2900.325 kb on + strandat 2900.325 kb on + strandat 2900.326 kb on - strandat 2900.760 kb on - strandat 2900.760 kb on - strandat 2900.760 kb on - strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.789 kb on + strandat 2900.790 kb on - strandat 2900.790 kb on - strandat 2900.790 kb on - strandat 2900.790 kb on - strandat 2900.790 kb on - strandat 2900.792 kb on + strandat 2900.792 kb on + strandat 2900.849 kb on + strandat 2900.849 kb on + strandat 2900.890 kb on + strandat 2900.890 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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2,899,587 - Pf1N1B4_2557 0.27 -1.2
2,899,607 - Pf1N1B4_2557 0.29 -1.0
2,899,648 + Pf1N1B4_2557 0.34 -2.1
2,899,649 - Pf1N1B4_2557 0.34 +1.6
2,899,649 - Pf1N1B4_2557 0.34 +1.4
2,899,650 + Pf1N1B4_2557 0.34 +0.5
2,899,650 + Pf1N1B4_2557 0.34 +0.9
2,899,650 + Pf1N1B4_2557 0.34 -0.7
2,899,650 + Pf1N1B4_2557 0.34 -1.8
2,899,651 - Pf1N1B4_2557 0.34 +1.1
2,899,651 - Pf1N1B4_2557 0.34 +1.0
2,899,941 + Pf1N1B4_2557 0.64 -0.6
2,899,941 + Pf1N1B4_2557 0.64 -1.9
2,899,941 + Pf1N1B4_2557 0.64 -1.2
2,900,000 + Pf1N1B4_2557 0.70 -1.7
2,900,076 + Pf1N1B4_2557 0.78 -0.4
2,900,076 + -1.2
2,900,180 + Pf1N1B4_2557 0.89 -1.9
2,900,224 + -0.6
2,900,225 - -0.6
2,900,243 + -1.6
2,900,244 - -1.2
2,900,244 - -0.8
2,900,325 + -1.0
2,900,325 + -1.9
2,900,326 - -2.2
2,900,760 - +0.1
2,900,760 - -1.0
2,900,760 - -1.2
2,900,789 + +1.0
2,900,789 + +2.0
2,900,789 + -1.2
2,900,789 + -1.2
2,900,789 + -1.6
2,900,789 + +0.2
2,900,789 + -0.6
2,900,789 + +0.4
2,900,789 + -1.6
2,900,789 + -1.2
2,900,789 + -3.1
2,900,789 + +2.4
2,900,789 + -0.6
2,900,789 + -2.4
2,900,789 + -2.4
2,900,789 + -0.6
2,900,790 - +0.8
2,900,790 - -1.9
2,900,790 - +0.4
2,900,790 - +0.1
2,900,790 - -1.4
2,900,792 + +0.4
2,900,792 + +0.4
2,900,849 + +0.7
2,900,849 + -0.2
2,900,890 + -0.3
2,900,890 + +2.1

Or see this region's nucleotide sequence