Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1779

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1777 and Pf1N1B4_1778 overlap by 4 nucleotidesPf1N1B4_1778 and Pf1N1B4_1779 overlap by 9 nucleotidesPf1N1B4_1779 and Pf1N1B4_1780 are separated by 134 nucleotidesPf1N1B4_1780 and Pf1N1B4_1781 are separated by 383 nucleotides Pf1N1B4_1777 - 33 kDa chaperonin (Heat shock protein 33) (HSP33), at 2,031,376 to 2,032,278 _1777 Pf1N1B4_1778 - hypothetical protein, at 2,032,275 to 2,032,466 _1778 Pf1N1B4_1779 - Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49), at 2,032,458 to 2,033,999 _1779 Pf1N1B4_1780 - FIG00961586: hypothetical protein, at 2,034,134 to 2,034,322 _1780 Pf1N1B4_1781 - hypothetical protein, at 2,034,706 to 2,035,005 _1781 Position (kb) 2032 2033 2034Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2031.462 kb on + strandat 2032.222 kb on - strandat 2032.277 kb on - strandat 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.997 kb on + strandat 2033.998 kb on - strandat 2033.998 kb on - strandat 2033.998 kb on - strandat 2034.001 kb on + strandat 2034.080 kb on + strandat 2034.080 kb on + strandat 2034.125 kb on + strandat 2034.126 kb on - strandat 2034.135 kb on + strandat 2034.136 kb on - strandat 2034.136 kb on - strandat 2034.198 kb on + strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.199 kb on - strand, within Pf1N1B4_1780at 2034.285 kb on + strand, within Pf1N1B4_1780at 2034.301 kb on - strand, within Pf1N1B4_1780at 2034.349 kb on - strandat 2034.349 kb on - strandat 2034.349 kb on - strandat 2034.368 kb on + strandat 2034.452 kb on + strandat 2034.452 kb on + strandat 2034.452 kb on + strandat 2034.453 kb on - strandat 2034.517 kb on + strandat 2034.517 kb on + strandat 2034.517 kb on + strandat 2034.517 kb on + strandat 2034.567 kb on + strandat 2034.783 kb on - strand, within Pf1N1B4_1781at 2034.967 kb on + strand, within Pf1N1B4_1781at 2034.967 kb on + strand, within Pf1N1B4_1781at 2034.968 kb on - strand, within Pf1N1B4_1781at 2034.999 kb on + strandat 2034.999 kb on + strandat 2034.999 kb on + strandat 2034.999 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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2,031,462 + -2.0
2,032,222 - +1.6
2,032,277 - -2.6
2,033,997 + -1.0
2,033,997 + +0.0
2,033,997 + +0.6
2,033,997 + -0.4
2,033,997 + +2.2
2,033,998 - -0.7
2,033,998 - +0.0
2,033,998 - -1.4
2,034,001 + +0.6
2,034,080 + +0.0
2,034,080 + -1.4
2,034,125 + +0.6
2,034,126 - -0.4
2,034,135 + +0.0
2,034,136 - -0.5
2,034,136 - -2.6
2,034,198 + Pf1N1B4_1780 0.34 +0.8
2,034,199 - Pf1N1B4_1780 0.34 -0.7
2,034,199 - Pf1N1B4_1780 0.34 -1.7
2,034,199 - Pf1N1B4_1780 0.34 +0.6
2,034,199 - Pf1N1B4_1780 0.34 +0.0
2,034,285 + Pf1N1B4_1780 0.80 +1.6
2,034,301 - Pf1N1B4_1780 0.88 -0.7
2,034,349 - +0.0
2,034,349 - -0.4
2,034,349 - +1.3
2,034,368 + -0.4
2,034,452 + -2.2
2,034,452 + -0.1
2,034,452 + +3.6
2,034,453 - +1.8
2,034,517 + +1.3
2,034,517 + -3.2
2,034,517 + -1.4
2,034,517 + +1.6
2,034,567 + -1.7
2,034,783 - Pf1N1B4_1781 0.26 -1.7
2,034,967 + Pf1N1B4_1781 0.87 +0.8
2,034,967 + Pf1N1B4_1781 0.87 -1.4
2,034,968 - Pf1N1B4_1781 0.87 +0.6
2,034,999 + +0.4
2,034,999 + -2.0
2,034,999 + -0.4
2,034,999 + -0.4

Or see this region's nucleotide sequence