Experiment: Fusidic 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf1N1B4_1092 and Pf1N1B4_1093 are separated by 12 nucleotides Pf1N1B4_1093 and Pf1N1B4_1094 are separated by 203 nucleotides
Pf1N1B4_1092 - TldD protein, part of TldE/TldD proteolytic complex, at 1,221,806 to 1,223,248
_1092
Pf1N1B4_1093 - FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog), at 1,223,261 to 1,224,115
_1093
Pf1N1B4_1094 - FIG005080: Possible exported protein, at 1,224,319 to 1,228,122
_1094
Position (kb)
1223
1224
1225 Strain fitness (log2 ratio)
-1
0
1
2 at 1222.261 kb on - strand, within Pf1N1B4_1092 at 1222.578 kb on + strand, within Pf1N1B4_1092 at 1222.609 kb on - strand, within Pf1N1B4_1092 at 1223.127 kb on + strand at 1223.248 kb on + strand at 1223.249 kb on - strand at 1223.249 kb on - strand at 1223.249 kb on - strand at 1223.255 kb on + strand at 1223.256 kb on - strand at 1223.262 kb on + strand at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.499 kb on + strand, within Pf1N1B4_1093 at 1223.500 kb on - strand, within Pf1N1B4_1093 at 1223.703 kb on + strand, within Pf1N1B4_1093 at 1223.704 kb on - strand, within Pf1N1B4_1093 at 1223.709 kb on + strand, within Pf1N1B4_1093 at 1223.710 kb on - strand, within Pf1N1B4_1093 at 1223.753 kb on + strand, within Pf1N1B4_1093 at 1223.753 kb on + strand, within Pf1N1B4_1093 at 1223.879 kb on + strand, within Pf1N1B4_1093 at 1223.885 kb on + strand at 1224.151 kb on - strand at 1224.241 kb on + strand at 1224.242 kb on - strand at 1224.271 kb on + strand at 1224.272 kb on - strand at 1224.272 kb on - strand at 1224.283 kb on - strand at 1224.283 kb on - strand at 1224.564 kb on + strand at 1224.775 kb on - strand, within Pf1N1B4_1094
Per-strain Table
Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml remove 1,222,261 - Pf1N1B4_1092 0.32 +0.3 1,222,578 + Pf1N1B4_1092 0.53 -0.7 1,222,609 - Pf1N1B4_1092 0.56 -1.2 1,223,127 + +0.3 1,223,248 + -0.2 1,223,249 - +0.6 1,223,249 - -0.4 1,223,249 - +1.3 1,223,255 + +0.9 1,223,256 - -0.2 1,223,262 + +1.6 1,223,499 + Pf1N1B4_1093 0.28 +1.3 1,223,499 + Pf1N1B4_1093 0.28 +0.9 1,223,499 + Pf1N1B4_1093 0.28 +1.9 1,223,499 + Pf1N1B4_1093 0.28 -1.7 1,223,499 + Pf1N1B4_1093 0.28 -1.7 1,223,499 + Pf1N1B4_1093 0.28 +0.4 1,223,500 - Pf1N1B4_1093 0.28 +1.3 1,223,703 + Pf1N1B4_1093 0.52 +2.1 1,223,704 - Pf1N1B4_1093 0.52 -0.7 1,223,709 + Pf1N1B4_1093 0.52 +0.3 1,223,710 - Pf1N1B4_1093 0.53 -0.1 1,223,753 + Pf1N1B4_1093 0.58 +1.7 1,223,753 + Pf1N1B4_1093 0.58 -0.7 1,223,879 + Pf1N1B4_1093 0.72 +0.9 1,223,885 + +0.3 1,224,151 - -0.2 1,224,241 + +2.1 1,224,242 - -1.7 1,224,271 + +0.1 1,224,272 - +1.3 1,224,272 - +2.1 1,224,283 - -0.1 1,224,283 - +0.3 1,224,564 + +0.9 1,224,775 - Pf1N1B4_1094 0.12 -0.8
Or see this region's nucleotide sequence