Strain Fitness in Pseudomonas fluorescens FW300-N1B4 around Pf1N1B4_1093

Experiment: Fusidic 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf1N1B4_1092 and Pf1N1B4_1093 are separated by 12 nucleotidesPf1N1B4_1093 and Pf1N1B4_1094 are separated by 203 nucleotides Pf1N1B4_1092 - TldD protein, part of TldE/TldD proteolytic complex, at 1,221,806 to 1,223,248 _1092 Pf1N1B4_1093 - FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog), at 1,223,261 to 1,224,115 _1093 Pf1N1B4_1094 - FIG005080: Possible exported protein, at 1,224,319 to 1,228,122 _1094 Position (kb) 1223 1224 1225Strain fitness (log2 ratio) -1 0 1 2at 1222.261 kb on - strand, within Pf1N1B4_1092at 1222.578 kb on + strand, within Pf1N1B4_1092at 1222.609 kb on - strand, within Pf1N1B4_1092at 1223.127 kb on + strandat 1223.248 kb on + strandat 1223.249 kb on - strandat 1223.249 kb on - strandat 1223.249 kb on - strandat 1223.255 kb on + strandat 1223.256 kb on - strandat 1223.262 kb on + strandat 1223.499 kb on + strand, within Pf1N1B4_1093at 1223.499 kb on + strand, within Pf1N1B4_1093at 1223.499 kb on + strand, within Pf1N1B4_1093at 1223.499 kb on + strand, within Pf1N1B4_1093at 1223.499 kb on + strand, within Pf1N1B4_1093at 1223.499 kb on + strand, within Pf1N1B4_1093at 1223.500 kb on - strand, within Pf1N1B4_1093at 1223.703 kb on + strand, within Pf1N1B4_1093at 1223.704 kb on - strand, within Pf1N1B4_1093at 1223.709 kb on + strand, within Pf1N1B4_1093at 1223.710 kb on - strand, within Pf1N1B4_1093at 1223.753 kb on + strand, within Pf1N1B4_1093at 1223.753 kb on + strand, within Pf1N1B4_1093at 1223.879 kb on + strand, within Pf1N1B4_1093at 1223.885 kb on + strandat 1224.151 kb on - strandat 1224.241 kb on + strandat 1224.242 kb on - strandat 1224.271 kb on + strandat 1224.272 kb on - strandat 1224.272 kb on - strandat 1224.283 kb on - strandat 1224.283 kb on - strandat 1224.564 kb on + strandat 1224.775 kb on - strand, within Pf1N1B4_1094

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Per-strain Table

Position Strand Gene LocusTag Fraction Fusidic 0.125 mg/ml
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1,222,261 - Pf1N1B4_1092 0.32 +0.3
1,222,578 + Pf1N1B4_1092 0.53 -0.7
1,222,609 - Pf1N1B4_1092 0.56 -1.2
1,223,127 + +0.3
1,223,248 + -0.2
1,223,249 - +0.6
1,223,249 - -0.4
1,223,249 - +1.3
1,223,255 + +0.9
1,223,256 - -0.2
1,223,262 + +1.6
1,223,499 + Pf1N1B4_1093 0.28 +1.3
1,223,499 + Pf1N1B4_1093 0.28 +0.9
1,223,499 + Pf1N1B4_1093 0.28 +1.9
1,223,499 + Pf1N1B4_1093 0.28 -1.7
1,223,499 + Pf1N1B4_1093 0.28 -1.7
1,223,499 + Pf1N1B4_1093 0.28 +0.4
1,223,500 - Pf1N1B4_1093 0.28 +1.3
1,223,703 + Pf1N1B4_1093 0.52 +2.1
1,223,704 - Pf1N1B4_1093 0.52 -0.7
1,223,709 + Pf1N1B4_1093 0.52 +0.3
1,223,710 - Pf1N1B4_1093 0.53 -0.1
1,223,753 + Pf1N1B4_1093 0.58 +1.7
1,223,753 + Pf1N1B4_1093 0.58 -0.7
1,223,879 + Pf1N1B4_1093 0.72 +0.9
1,223,885 + +0.3
1,224,151 - -0.2
1,224,241 + +2.1
1,224,242 - -1.7
1,224,271 + +0.1
1,224,272 - +1.3
1,224,272 - +2.1
1,224,283 - -0.1
1,224,283 - +0.3
1,224,564 + +0.9
1,224,775 - Pf1N1B4_1094 0.12 -0.8

Or see this region's nucleotide sequence