Experiment: R2A with lithium chloride 15.625 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK54_RS08440 and LRK54_RS08445 are separated by 88 nucleotides LRK54_RS08445 and LRK54_RS08450 are separated by 4 nucleotides LRK54_RS08450 and LRK54_RS08455 are separated by 11 nucleotides LRK54_RS08455 and LRK54_RS08460 are separated by 55 nucleotides
LRK54_RS08440: LRK54_RS08440 - pyridoxine 5'-phosphate synthase, at 1,841,453 to 1,842,196
_RS08440
LRK54_RS08445: LRK54_RS08445 - biopolymer transporter ExbD, at 1,842,285 to 1,842,689
_RS08445
LRK54_RS08450: LRK54_RS08450 - biopolymer transporter ExbD, at 1,842,694 to 1,843,116
_RS08450
LRK54_RS08455: LRK54_RS08455 - MotA/TolQ/ExbB proton channel family protein, at 1,843,128 to 1,843,901
_RS08455
LRK54_RS08460: LRK54_RS08460 - energy transducer TonB, at 1,843,957 to 1,844,616
_RS08460
Position (kb)
1842
1843
1844 Strain fitness (log2 ratio)
-1
0
1
2
3 at 1843.103 kb on - strand at 1843.103 kb on - strand at 1843.913 kb on - strand at 1843.913 kb on - strand at 1843.913 kb on - strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.934 kb on + strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.935 kb on - strand at 1843.940 kb on + strand at 1843.940 kb on + strand at 1843.941 kb on - strand at 1843.941 kb on - strand at 1843.941 kb on - strand at 1843.959 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with lithium chloride 15.625 mM remove 1,843,103 - +1.0 1,843,103 - +1.0 1,843,913 - +2.7 1,843,913 - +2.6 1,843,913 - +3.1 1,843,934 + +0.7 1,843,934 + -1.6 1,843,934 + +1.7 1,843,934 + +0.3 1,843,934 + +0.2 1,843,934 + -0.3 1,843,934 + -0.1 1,843,934 + +0.6 1,843,934 + +0.2 1,843,935 - +1.3 1,843,935 - +1.2 1,843,935 - +1.5 1,843,935 - +2.0 1,843,935 - +2.6 1,843,935 - +1.4 1,843,935 - +1.3 1,843,935 - +1.0 1,843,935 - +2.6 1,843,935 - +0.7 1,843,935 - +1.7 1,843,935 - +1.0 1,843,935 - +1.7 1,843,935 - +1.2 1,843,935 - +1.1 1,843,935 - +1.7 1,843,935 - +1.0 1,843,935 - +1.3 1,843,940 + +2.7 1,843,940 + -1.6 1,843,941 - +1.6 1,843,941 - +1.3 1,843,941 - +1.8 1,843,959 - +2.6
Or see this region's nucleotide sequence