Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_901

Experiment: Cephalothin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_900 and Ac3H11_901 are separated by 161 nucleotidesAc3H11_901 and Ac3H11_902 are separated by 134 nucleotides Ac3H11_900 - N-acetylglutamate synthase (EC 2.3.1.1), at 11,311 to 12,657 _900 Ac3H11_901 - Beta-lactamase (EC 3.5.2.6), at 12,819 to 13,700 _901 Ac3H11_902 - Glycine cleavage system transcriptional activator, at 13,835 to 14,713 _902 Position (kb) 12 13 14Strain fitness (log2 ratio) -3 -2 -1 0 1at 12.669 kb on - strandat 12.907 kb on + strandat 13.387 kb on + strand, within Ac3H11_901at 13.387 kb on + strand, within Ac3H11_901at 13.722 kb on - strandat 13.760 kb on + strandat 13.792 kb on + strandat 13.792 kb on + strandat 13.792 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.025 mg/ml
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12,669 - -0.4
12,907 + -1.6
13,387 + Ac3H11_901 0.64 -3.4
13,387 + Ac3H11_901 0.64 -1.4
13,722 - +1.3
13,760 + -0.5
13,792 + -0.3
13,792 + -1.0
13,792 + -0.6

Or see this region's nucleotide sequence