Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_3947

Experiment: Cephalothin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_3945 and Ac3H11_3946 overlap by 1 nucleotidesAc3H11_3946 and Ac3H11_3947 overlap by 20 nucleotidesAc3H11_3947 and Ac3H11_3948 overlap by 105 nucleotides Ac3H11_3945 - Sensory histidine kinase QseC, at 167,801 to 169,138 _3945 Ac3H11_3946 - Two-component system response regulator QseB, at 169,138 to 169,797 _3946 Ac3H11_3947 - hypothetical protein, at 169,778 to 169,900 _3947 Ac3H11_3948 - Ferrichrome-iron receptor, at 169,796 to 172,105 _3948 Position (kb) 169 170Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 168.982 kb on - strand, within Ac3H11_3945at 168.982 kb on - strand, within Ac3H11_3945at 169.220 kb on + strand, within Ac3H11_3946at 169.220 kb on + strand, within Ac3H11_3946at 169.220 kb on + strand, within Ac3H11_3946at 169.221 kb on - strand, within Ac3H11_3946at 169.221 kb on - strand, within Ac3H11_3946at 169.418 kb on + strand, within Ac3H11_3946at 169.419 kb on - strand, within Ac3H11_3946at 169.505 kb on + strand, within Ac3H11_3946at 169.506 kb on - strand, within Ac3H11_3946at 169.506 kb on - strand, within Ac3H11_3946at 169.665 kb on - strand, within Ac3H11_3946at 169.724 kb on + strand, within Ac3H11_3946at 169.725 kb on - strand, within Ac3H11_3946at 169.809 kb on - strandat 169.809 kb on - strandat 169.913 kb on + strandat 170.234 kb on - strand, within Ac3H11_3948at 170.285 kb on + strand, within Ac3H11_3948at 170.285 kb on + strand, within Ac3H11_3948at 170.286 kb on - strand, within Ac3H11_3948at 170.286 kb on - strand, within Ac3H11_3948at 170.286 kb on - strand, within Ac3H11_3948at 170.327 kb on + strand, within Ac3H11_3948at 170.357 kb on + strand, within Ac3H11_3948at 170.358 kb on - strand, within Ac3H11_3948at 170.358 kb on - strand, within Ac3H11_3948at 170.358 kb on - strand, within Ac3H11_3948at 170.375 kb on + strand, within Ac3H11_3948at 170.426 kb on + strand, within Ac3H11_3948at 170.426 kb on + strand, within Ac3H11_3948at 170.426 kb on + strand, within Ac3H11_3948at 170.427 kb on - strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.459 kb on + strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.460 kb on - strand, within Ac3H11_3948at 170.520 kb on + strand, within Ac3H11_3948at 170.855 kb on + strand, within Ac3H11_3948at 170.855 kb on + strand, within Ac3H11_3948at 170.855 kb on + strand, within Ac3H11_3948at 170.856 kb on - strand, within Ac3H11_3948at 170.856 kb on - strand, within Ac3H11_3948at 170.856 kb on - strand, within Ac3H11_3948at 170.876 kb on + strand, within Ac3H11_3948

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.025 mg/ml
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168,982 - Ac3H11_3945 0.88 -1.9
168,982 - Ac3H11_3945 0.88 -3.1
169,220 + Ac3H11_3946 0.12 -1.2
169,220 + Ac3H11_3946 0.12 -0.5
169,220 + Ac3H11_3946 0.12 +0.7
169,221 - Ac3H11_3946 0.13 +0.2
169,221 - Ac3H11_3946 0.13 -0.5
169,418 + Ac3H11_3946 0.42 -0.8
169,419 - Ac3H11_3946 0.43 -0.6
169,505 + Ac3H11_3946 0.56 +0.1
169,506 - Ac3H11_3946 0.56 -0.4
169,506 - Ac3H11_3946 0.56 +0.1
169,665 - Ac3H11_3946 0.80 +0.8
169,724 + Ac3H11_3946 0.89 +0.5
169,725 - Ac3H11_3946 0.89 +0.3
169,809 - -2.0
169,809 - +0.1
169,913 + +0.6
170,234 - Ac3H11_3948 0.19 -0.3
170,285 + Ac3H11_3948 0.21 +0.6
170,285 + Ac3H11_3948 0.21 +1.6
170,286 - Ac3H11_3948 0.21 +0.2
170,286 - Ac3H11_3948 0.21 +0.2
170,286 - Ac3H11_3948 0.21 -0.8
170,327 + Ac3H11_3948 0.23 -0.6
170,357 + Ac3H11_3948 0.24 +0.1
170,358 - Ac3H11_3948 0.24 -0.0
170,358 - Ac3H11_3948 0.24 -0.3
170,358 - Ac3H11_3948 0.24 -1.1
170,375 + Ac3H11_3948 0.25 +0.8
170,426 + Ac3H11_3948 0.27 +0.2
170,426 + Ac3H11_3948 0.27 +0.1
170,426 + Ac3H11_3948 0.27 -0.4
170,427 - Ac3H11_3948 0.27 +0.8
170,459 + Ac3H11_3948 0.29 -0.8
170,459 + Ac3H11_3948 0.29 +0.3
170,459 + Ac3H11_3948 0.29 -0.6
170,459 + Ac3H11_3948 0.29 +0.1
170,459 + Ac3H11_3948 0.29 -0.7
170,460 - Ac3H11_3948 0.29 -0.3
170,460 - Ac3H11_3948 0.29 -0.5
170,460 - Ac3H11_3948 0.29 -0.8
170,460 - Ac3H11_3948 0.29 -0.3
170,460 - Ac3H11_3948 0.29 +0.2
170,460 - Ac3H11_3948 0.29 -1.0
170,460 - Ac3H11_3948 0.29 +2.4
170,460 - Ac3H11_3948 0.29 -1.0
170,460 - Ac3H11_3948 0.29 +0.1
170,520 + Ac3H11_3948 0.31 -0.8
170,855 + Ac3H11_3948 0.46 -0.1
170,855 + Ac3H11_3948 0.46 +0.2
170,855 + Ac3H11_3948 0.46 -0.3
170,856 - Ac3H11_3948 0.46 +0.5
170,856 - Ac3H11_3948 0.46 +0.1
170,856 - Ac3H11_3948 0.46 +0.8
170,876 + Ac3H11_3948 0.47 +0.0

Or see this region's nucleotide sequence