Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_347

Experiment: Cephalothin 0.025 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_345 and Ac3H11_346 overlap by 4 nucleotidesAc3H11_346 and Ac3H11_347 are separated by 775 nucleotidesAc3H11_347 and Ac3H11_348 are separated by 28 nucleotidesAc3H11_348 and Ac3H11_349 overlap by 1 nucleotidesAc3H11_349 and Ac3H11_350 are separated by 59 nucleotidesAc3H11_350 and Ac3H11_351 are separated by 34 nucleotides Ac3H11_345 - hypothetical protein, at 21,828 to 22,223 _345 Ac3H11_346 - hypothetical protein, at 22,220 to 22,435 _346 Ac3H11_347 - probable phage replication protein NMA0782, at 23,211 to 24,197 _347 Ac3H11_348 - hypothetical protein, at 24,226 to 24,549 _348 Ac3H11_349 - hypothetical protein, at 24,549 to 24,758 _349 Ac3H11_350 - hypothetical protein, at 24,818 to 25,024 _350 Ac3H11_351 - hypothetical protein, at 25,059 to 25,223 _351 Position (kb) 23 24 25Strain fitness (log2 ratio) -2 -1 0 1at 22.325 kb on + strand, within Ac3H11_346at 22.326 kb on - strand, within Ac3H11_346at 22.356 kb on - strand, within Ac3H11_346at 22.356 kb on - strand, within Ac3H11_346at 22.356 kb on - strand, within Ac3H11_346at 22.520 kb on - strandat 22.624 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.755 kb on - strandat 22.899 kb on + strandat 23.005 kb on + strandat 23.005 kb on + strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.006 kb on - strandat 23.143 kb on + strandat 23.143 kb on + strandat 23.143 kb on + strandat 23.144 kb on - strandat 23.184 kb on + strandat 23.184 kb on + strandat 23.184 kb on + strandat 23.185 kb on - strandat 23.185 kb on - strandat 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.314 kb on + strand, within Ac3H11_347at 23.315 kb on - strand, within Ac3H11_347at 23.346 kb on + strand, within Ac3H11_347at 23.346 kb on + strand, within Ac3H11_347at 23.463 kb on + strand, within Ac3H11_347at 23.463 kb on + strand, within Ac3H11_347at 23.503 kb on - strand, within Ac3H11_347at 23.613 kb on + strand, within Ac3H11_347at 23.739 kb on + strand, within Ac3H11_347at 23.739 kb on + strand, within Ac3H11_347at 23.740 kb on - strandat 23.827 kb on + strand, within Ac3H11_347at 23.828 kb on - strand, within Ac3H11_347at 23.828 kb on - strand, within Ac3H11_347at 23.828 kb on - strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.842 kb on + strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.843 kb on - strand, within Ac3H11_347at 23.983 kb on + strand, within Ac3H11_347at 23.984 kb on - strand, within Ac3H11_347at 23.984 kb on - strand, within Ac3H11_347at 23.984 kb on - strand, within Ac3H11_347at 24.127 kb on + strandat 24.165 kb on - strandat 24.195 kb on + strandat 24.195 kb on + strandat 24.196 kb on - strandat 24.196 kb on - strandat 24.278 kb on + strand, within Ac3H11_348at 24.354 kb on + strand, within Ac3H11_348at 24.354 kb on + strand, within Ac3H11_348at 24.354 kb on + strand, within Ac3H11_348at 24.555 kb on + strandat 24.556 kb on - strandat 24.601 kb on - strand, within Ac3H11_349at 24.601 kb on - strand, within Ac3H11_349at 24.791 kb on - strandat 24.800 kb on + strandat 24.800 kb on + strandat 24.801 kb on - strandat 24.801 kb on - strandat 25.188 kb on - strandat 25.188 kb on - strand, within Ac3H11_351

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Per-strain Table

Position Strand Gene LocusTag Fraction Cephalothin 0.025 mg/ml
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22,325 + Ac3H11_346 0.49 -1.3
22,326 - Ac3H11_346 0.49 -0.7
22,356 - Ac3H11_346 0.63 -1.3
22,356 - Ac3H11_346 0.63 -0.6
22,356 - Ac3H11_346 0.63 -0.3
22,520 - +0.3
22,624 - +0.4
22,755 - -0.9
22,755 - +1.7
22,755 - -0.9
22,755 - +0.9
22,755 - +0.6
22,755 - -1.4
22,755 - +0.3
22,755 - +1.0
22,899 + +0.7
23,005 + +0.1
23,005 + -0.2
23,006 - +0.6
23,006 - +0.6
23,006 - -0.2
23,006 - +0.6
23,006 - +0.5
23,143 + -0.6
23,143 + +0.0
23,143 + -0.5
23,144 - -0.9
23,184 + +0.2
23,184 + -0.0
23,184 + -0.8
23,185 - +0.1
23,185 - +1.1
23,314 + Ac3H11_347 0.10 -1.7
23,314 + Ac3H11_347 0.10 +0.5
23,314 + Ac3H11_347 0.10 +0.4
23,314 + Ac3H11_347 0.10 +0.4
23,314 + Ac3H11_347 0.10 -0.4
23,315 - Ac3H11_347 0.11 -0.5
23,346 + Ac3H11_347 0.14 -0.2
23,346 + Ac3H11_347 0.14 +0.8
23,463 + Ac3H11_347 0.26 +0.4
23,463 + Ac3H11_347 0.26 +1.7
23,503 - Ac3H11_347 0.30 -0.8
23,613 + Ac3H11_347 0.41 -0.5
23,739 + Ac3H11_347 0.53 +0.2
23,739 + Ac3H11_347 0.53 +0.2
23,740 - +1.7
23,827 + Ac3H11_347 0.62 -0.1
23,828 - Ac3H11_347 0.63 -1.3
23,828 - Ac3H11_347 0.63 -0.3
23,828 - Ac3H11_347 0.63 -1.3
23,842 + Ac3H11_347 0.64 -0.5
23,842 + Ac3H11_347 0.64 -0.7
23,842 + Ac3H11_347 0.64 +1.0
23,842 + Ac3H11_347 0.64 +0.9
23,842 + Ac3H11_347 0.64 +0.2
23,842 + Ac3H11_347 0.64 -0.5
23,842 + Ac3H11_347 0.64 +0.7
23,842 + Ac3H11_347 0.64 -0.5
23,842 + Ac3H11_347 0.64 -0.8
23,843 - Ac3H11_347 0.64 +0.8
23,843 - Ac3H11_347 0.64 +0.7
23,843 - Ac3H11_347 0.64 +0.5
23,843 - Ac3H11_347 0.64 +1.0
23,843 - Ac3H11_347 0.64 +0.3
23,843 - Ac3H11_347 0.64 -1.2
23,843 - Ac3H11_347 0.64 +0.7
23,843 - Ac3H11_347 0.64 -0.2
23,983 + Ac3H11_347 0.78 -0.6
23,984 - Ac3H11_347 0.78 -0.5
23,984 - Ac3H11_347 0.78 +0.5
23,984 - Ac3H11_347 0.78 +0.8
24,127 + -2.2
24,165 - +0.0
24,195 + +0.3
24,195 + -0.4
24,196 - -0.5
24,196 - +0.3
24,278 + Ac3H11_348 0.16 +0.4
24,354 + Ac3H11_348 0.40 -0.0
24,354 + Ac3H11_348 0.40 -0.2
24,354 + Ac3H11_348 0.40 +0.2
24,555 + -0.1
24,556 - -0.7
24,601 - Ac3H11_349 0.25 +0.7
24,601 - Ac3H11_349 0.25 +0.1
24,791 - -0.4
24,800 + -1.3
24,800 + +0.1
24,801 - -0.3
24,801 - +0.3
25,188 - +1.1
25,188 - Ac3H11_351 0.78 +0.1

Or see this region's nucleotide sequence