Experiment: Cephalothin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_343 and Ac3H11_344 are separated by 88 nucleotides Ac3H11_344 and Ac3H11_345 are separated by 228 nucleotides Ac3H11_345 and Ac3H11_346 overlap by 4 nucleotides Ac3H11_346 and Ac3H11_347 are separated by 775 nucleotides
Ac3H11_343 - Two-component system response regulator OmpR, at 20,606 to 21,337
_343
Ac3H11_344 - hypothetical protein, at 21,426 to 21,599
_344
Ac3H11_345 - hypothetical protein, at 21,828 to 22,223
_345
Ac3H11_346 - hypothetical protein, at 22,220 to 22,435
_346
Ac3H11_347 - probable phage replication protein NMA0782, at 23,211 to 24,197
_347
Position (kb)
22
23 Strain fitness (log2 ratio)
-1
0
1 at 21.428 kb on - strand at 21.810 kb on - strand at 22.033 kb on - strand, within Ac3H11_345 at 22.059 kb on + strand, within Ac3H11_345 at 22.060 kb on - strand, within Ac3H11_345 at 22.325 kb on + strand, within Ac3H11_346 at 22.326 kb on - strand, within Ac3H11_346 at 22.356 kb on - strand, within Ac3H11_346 at 22.356 kb on - strand, within Ac3H11_346 at 22.356 kb on - strand, within Ac3H11_346 at 22.520 kb on - strand at 22.624 kb on - strand at 22.755 kb on - strand at 22.755 kb on - strand at 22.755 kb on - strand at 22.755 kb on - strand at 22.755 kb on - strand at 22.755 kb on - strand at 22.755 kb on - strand at 22.755 kb on - strand at 22.899 kb on + strand at 23.005 kb on + strand at 23.005 kb on + strand at 23.006 kb on - strand at 23.006 kb on - strand at 23.006 kb on - strand at 23.006 kb on - strand at 23.006 kb on - strand at 23.143 kb on + strand at 23.143 kb on + strand at 23.143 kb on + strand at 23.144 kb on - strand at 23.184 kb on + strand at 23.184 kb on + strand at 23.184 kb on + strand at 23.185 kb on - strand at 23.185 kb on - strand at 23.314 kb on + strand, within Ac3H11_347 at 23.314 kb on + strand, within Ac3H11_347 at 23.314 kb on + strand, within Ac3H11_347 at 23.314 kb on + strand, within Ac3H11_347 at 23.314 kb on + strand, within Ac3H11_347 at 23.315 kb on - strand, within Ac3H11_347 at 23.346 kb on + strand, within Ac3H11_347 at 23.346 kb on + strand, within Ac3H11_347
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.025 mg/ml remove 21,428 - -1.1 21,810 - +1.0 22,033 - Ac3H11_345 0.52 +0.4 22,059 + Ac3H11_345 0.58 +0.2 22,060 - Ac3H11_345 0.59 +1.5 22,325 + Ac3H11_346 0.49 -1.3 22,326 - Ac3H11_346 0.49 -0.7 22,356 - Ac3H11_346 0.63 -1.3 22,356 - Ac3H11_346 0.63 -0.6 22,356 - Ac3H11_346 0.63 -0.3 22,520 - +0.3 22,624 - +0.4 22,755 - -0.9 22,755 - +1.7 22,755 - -0.9 22,755 - +0.9 22,755 - +0.6 22,755 - -1.4 22,755 - +0.3 22,755 - +1.0 22,899 + +0.7 23,005 + +0.1 23,005 + -0.2 23,006 - +0.6 23,006 - +0.6 23,006 - -0.2 23,006 - +0.6 23,006 - +0.5 23,143 + -0.6 23,143 + +0.0 23,143 + -0.5 23,144 - -0.9 23,184 + +0.2 23,184 + -0.0 23,184 + -0.8 23,185 - +0.1 23,185 - +1.1 23,314 + Ac3H11_347 0.10 -1.7 23,314 + Ac3H11_347 0.10 +0.5 23,314 + Ac3H11_347 0.10 +0.4 23,314 + Ac3H11_347 0.10 +0.4 23,314 + Ac3H11_347 0.10 -0.4 23,315 - Ac3H11_347 0.11 -0.5 23,346 + Ac3H11_347 0.14 -0.2 23,346 + Ac3H11_347 0.14 +0.8
Or see this region's nucleotide sequence