Experiment: Cephalothin 0.025 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Ac3H11_2590 and Ac3H11_2591 are separated by 18 nucleotides Ac3H11_2591 and Ac3H11_2592 are separated by 20 nucleotides Ac3H11_2592 and Ac3H11_2593 are separated by 120 nucleotides Ac3H11_2593 and Ac3H11_2594 are separated by 119 nucleotides
Ac3H11_2590 - TRAP transporter solute receptor, unknown substrate 5, at 871,634 to 872,617
_2590
Ac3H11_2591 - TRAP dicarboxylate transporter, DctQ subunit, unknown substrate 5, at 872,636 to 873,145
_2591
Ac3H11_2592 - TRAP dicarboxylate transporter, DctM subunit, unknown substrate 5, at 873,166 to 874,470
_2592
Ac3H11_2593 - Protein crcB homolog, at 874,591 to 874,974
_2593
Ac3H11_2594 - FIG01199081: hypothetical protein, at 875,094 to 875,957
_2594
Position (kb) 873
874
875 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 872.289 kb on - strand, within Ac3H11_2590 at 872.289 kb on - strand, within Ac3H11_2590 at 872.306 kb on + strand, within Ac3H11_2590 at 872.306 kb on + strand, within Ac3H11_2590 at 872.306 kb on + strand, within Ac3H11_2590 at 872.306 kb on + strand, within Ac3H11_2590 at 872.310 kb on - strand, within Ac3H11_2590 at 872.310 kb on - strand, within Ac3H11_2590 at 872.496 kb on + strand, within Ac3H11_2590 at 872.497 kb on - strand, within Ac3H11_2590 at 872.497 kb on - strand, within Ac3H11_2590 at 872.606 kb on + strand at 872.615 kb on + strand at 872.615 kb on + strand at 872.616 kb on - strand at 872.616 kb on - strand at 872.661 kb on - strand at 872.661 kb on - strand at 872.771 kb on + strand, within Ac3H11_2591 at 872.771 kb on + strand, within Ac3H11_2591 at 872.771 kb on + strand, within Ac3H11_2591 at 872.772 kb on - strand, within Ac3H11_2591 at 872.772 kb on - strand, within Ac3H11_2591 at 872.772 kb on - strand, within Ac3H11_2591 at 872.945 kb on + strand, within Ac3H11_2591 at 872.945 kb on + strand, within Ac3H11_2591 at 873.158 kb on + strand at 873.656 kb on - strand, within Ac3H11_2592 at 873.742 kb on + strand, within Ac3H11_2592 at 873.742 kb on + strand, within Ac3H11_2592 at 873.880 kb on + strand, within Ac3H11_2592 at 873.880 kb on + strand, within Ac3H11_2592 at 873.880 kb on + strand, within Ac3H11_2592 at 873.880 kb on + strand, within Ac3H11_2592 at 873.881 kb on - strand, within Ac3H11_2592 at 873.881 kb on - strand, within Ac3H11_2592 at 873.881 kb on - strand, within Ac3H11_2592 at 874.009 kb on + strand, within Ac3H11_2592 at 874.009 kb on + strand, within Ac3H11_2592 at 874.010 kb on - strand, within Ac3H11_2592 at 874.010 kb on - strand, within Ac3H11_2592 at 874.010 kb on - strand, within Ac3H11_2592 at 874.010 kb on - strand, within Ac3H11_2592 at 874.066 kb on + strand, within Ac3H11_2592 at 874.067 kb on - strand, within Ac3H11_2592 at 874.417 kb on + strand at 874.417 kb on + strand at 874.418 kb on - strand at 874.418 kb on - strand at 874.418 kb on - strand at 874.538 kb on + strand at 874.538 kb on + strand at 874.538 kb on + strand at 874.539 kb on - strand at 874.870 kb on + strand, within Ac3H11_2593 at 874.870 kb on + strand, within Ac3H11_2593 at 874.870 kb on + strand, within Ac3H11_2593 at 874.870 kb on + strand, within Ac3H11_2593 at 874.938 kb on - strand at 874.952 kb on - strand at 875.442 kb on + strand, within Ac3H11_2594 at 875.442 kb on + strand, within Ac3H11_2594 at 875.443 kb on - strand, within Ac3H11_2594 at 875.443 kb on - strand, within Ac3H11_2594
Per-strain Table
Position Strand Gene LocusTag Fraction Cephalothin 0.025 mg/ml remove 872,289 - Ac3H11_2590 0.67 -1.4 872,289 - Ac3H11_2590 0.67 +0.1 872,306 + Ac3H11_2590 0.68 -0.3 872,306 + Ac3H11_2590 0.68 -0.5 872,306 + Ac3H11_2590 0.68 -0.4 872,306 + Ac3H11_2590 0.68 +0.2 872,310 - Ac3H11_2590 0.69 +2.0 872,310 - Ac3H11_2590 0.69 -0.5 872,496 + Ac3H11_2590 0.88 +1.0 872,497 - Ac3H11_2590 0.88 +0.2 872,497 - Ac3H11_2590 0.88 +0.4 872,606 + -0.3 872,615 + -0.3 872,615 + -0.5 872,616 - +0.3 872,616 - -1.4 872,661 - -0.2 872,661 - +0.3 872,771 + Ac3H11_2591 0.26 -0.1 872,771 + Ac3H11_2591 0.26 -0.5 872,771 + Ac3H11_2591 0.26 +0.5 872,772 - Ac3H11_2591 0.27 +0.5 872,772 - Ac3H11_2591 0.27 -0.4 872,772 - Ac3H11_2591 0.27 -0.1 872,945 + Ac3H11_2591 0.61 +0.8 872,945 + Ac3H11_2591 0.61 +0.6 873,158 + -0.5 873,656 - Ac3H11_2592 0.38 +0.7 873,742 + Ac3H11_2592 0.44 +0.2 873,742 + Ac3H11_2592 0.44 -0.5 873,880 + Ac3H11_2592 0.55 +0.0 873,880 + Ac3H11_2592 0.55 +0.3 873,880 + Ac3H11_2592 0.55 +0.8 873,880 + Ac3H11_2592 0.55 -0.2 873,881 - Ac3H11_2592 0.55 +0.4 873,881 - Ac3H11_2592 0.55 -0.1 873,881 - Ac3H11_2592 0.55 -0.2 874,009 + Ac3H11_2592 0.65 +1.2 874,009 + Ac3H11_2592 0.65 -0.2 874,010 - Ac3H11_2592 0.65 -0.0 874,010 - Ac3H11_2592 0.65 -0.2 874,010 - Ac3H11_2592 0.65 -0.5 874,010 - Ac3H11_2592 0.65 +0.3 874,066 + Ac3H11_2592 0.69 -0.9 874,067 - Ac3H11_2592 0.69 +0.8 874,417 + -0.1 874,417 + +0.3 874,418 - +0.2 874,418 - +1.2 874,418 - -0.7 874,538 + +1.2 874,538 + +1.4 874,538 + -0.3 874,539 - +0.6 874,870 + Ac3H11_2593 0.73 +1.9 874,870 + Ac3H11_2593 0.73 -0.8 874,870 + Ac3H11_2593 0.73 -2.7 874,870 + Ac3H11_2593 0.73 -3.0 874,938 - -1.6 874,952 - -0.0 875,442 + Ac3H11_2594 0.40 +1.6 875,442 + Ac3H11_2594 0.40 -1.0 875,443 - Ac3H11_2594 0.40 +1.1 875,443 - Ac3H11_2594 0.40 -0.6
Or see this region's nucleotide sequence