Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_27205

Experiment: methylglyoxal 0.009 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_27200 and AO353_27205 are separated by 418 nucleotidesAO353_27205 and AO353_27210 are separated by 89 nucleotides AO353_27200: AO353_27200 - tRNA-Leu, at 5,950,632 to 5,950,718 _27200 AO353_27205: AO353_27205 - hypothetical protein, at 5,951,137 to 5,951,511 _27205 AO353_27210: AO353_27210 - hypothetical protein, at 5,951,601 to 5,952,761 _27210 Position (kb) 5951 5952Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5950.159 kb on + strandat 5950.277 kb on + strandat 5950.277 kb on + strandat 5950.278 kb on - strandat 5950.297 kb on + strandat 5950.297 kb on + strandat 5950.297 kb on + strandat 5950.297 kb on + strandat 5950.297 kb on + strandat 5950.298 kb on - strandat 5950.322 kb on + strandat 5950.322 kb on + strandat 5950.322 kb on + strandat 5950.322 kb on + strandat 5950.322 kb on + strandat 5950.322 kb on + strandat 5950.323 kb on - strandat 5950.323 kb on - strandat 5950.430 kb on + strandat 5950.431 kb on - strandat 5950.451 kb on + strandat 5950.481 kb on + strandat 5950.481 kb on + strandat 5950.481 kb on + strandat 5950.481 kb on + strandat 5950.482 kb on - strandat 5950.493 kb on + strandat 5950.493 kb on + strandat 5950.506 kb on + strandat 5950.507 kb on - strandat 5950.523 kb on - strandat 5950.566 kb on - strandat 5950.569 kb on - strandat 5950.569 kb on - strandat 5950.794 kb on - strandat 5950.794 kb on - strandat 5950.794 kb on - strandat 5950.794 kb on - strandat 5950.796 kb on - strandat 5950.796 kb on - strandat 5950.796 kb on - strandat 5950.796 kb on - strandat 5950.796 kb on - strandat 5950.796 kb on - strandat 5950.798 kb on - strandat 5950.798 kb on - strandat 5950.798 kb on - strandat 5950.894 kb on - strandat 5950.902 kb on - strandat 5950.902 kb on - strandat 5950.906 kb on - strandat 5950.906 kb on - strandat 5950.908 kb on - strandat 5950.908 kb on - strandat 5951.085 kb on + strandat 5951.085 kb on + strandat 5951.085 kb on + strandat 5951.086 kb on - strandat 5951.086 kb on - strandat 5951.086 kb on - strandat 5951.086 kb on - strandat 5951.086 kb on - strandat 5951.086 kb on - strandat 5951.088 kb on + strandat 5951.089 kb on - strandat 5951.089 kb on - strandat 5951.089 kb on - strandat 5951.089 kb on - strandat 5951.089 kb on - strandat 5951.089 kb on - strandat 5951.089 kb on - strandat 5951.121 kb on - strandat 5951.136 kb on + strandat 5951.150 kb on - strandat 5951.154 kb on - strandat 5951.154 kb on - strandat 5951.239 kb on + strand, within AO353_27205at 5951.239 kb on + strand, within AO353_27205at 5951.239 kb on + strand, within AO353_27205at 5951.240 kb on - strand, within AO353_27205at 5951.326 kb on + strand, within AO353_27205at 5951.326 kb on + strand, within AO353_27205at 5951.326 kb on + strand, within AO353_27205at 5951.326 kb on + strand, within AO353_27205at 5951.326 kb on + strand, within AO353_27205at 5951.326 kb on + strand, within AO353_27205at 5951.327 kb on - strand, within AO353_27205at 5951.327 kb on - strand, within AO353_27205at 5951.394 kb on + strand, within AO353_27205at 5951.394 kb on + strand, within AO353_27205at 5951.413 kb on + strand, within AO353_27205at 5951.413 kb on + strand, within AO353_27205at 5951.414 kb on - strand, within AO353_27205at 5951.414 kb on - strand, within AO353_27205at 5951.414 kb on - strand, within AO353_27205at 5951.414 kb on - strand, within AO353_27205at 5951.414 kb on - strand, within AO353_27205at 5951.414 kb on - strand, within AO353_27205at 5951.414 kb on - strand, within AO353_27205at 5951.471 kb on + strand, within AO353_27205at 5951.486 kb on + strandat 5951.486 kb on + strandat 5951.486 kb on + strandat 5951.486 kb on + strandat 5951.487 kb on - strandat 5951.487 kb on - strandat 5951.487 kb on - strandat 5951.487 kb on - strandat 5951.509 kb on + strandat 5951.509 kb on + strandat 5951.539 kb on + strandat 5951.578 kb on + strandat 5951.579 kb on - strandat 5951.596 kb on + strandat 5951.597 kb on - strandat 5951.597 kb on - strandat 5951.597 kb on - strandat 5951.608 kb on - strandat 5951.833 kb on - strand, within AO353_27210at 5951.903 kb on + strand, within AO353_27210at 5951.911 kb on + strand, within AO353_27210at 5951.914 kb on - strand, within AO353_27210at 5951.928 kb on - strand, within AO353_27210at 5951.976 kb on + strand, within AO353_27210at 5952.098 kb on + strand, within AO353_27210at 5952.099 kb on - strand, within AO353_27210at 5952.102 kb on + strand, within AO353_27210at 5952.103 kb on - strand, within AO353_27210at 5952.133 kb on + strand, within AO353_27210at 5952.400 kb on - strand, within AO353_27210at 5952.420 kb on - strandat 5952.420 kb on - strand, within AO353_27210at 5952.420 kb on - strand, within AO353_27210at 5952.444 kb on + strand, within AO353_27210at 5952.444 kb on + strand, within AO353_27210at 5952.445 kb on - strand, within AO353_27210at 5952.445 kb on - strand, within AO353_27210at 5952.445 kb on - strand, within AO353_27210at 5952.476 kb on + strand, within AO353_27210

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol%
remove
5,950,159 + +0.8
5,950,277 + -1.6
5,950,277 + -1.0
5,950,278 - -0.2
5,950,297 + -2.1
5,950,297 + +1.8
5,950,297 + -1.7
5,950,297 + +1.2
5,950,297 + -0.5
5,950,298 - -1.6
5,950,322 + +3.0
5,950,322 + +1.3
5,950,322 + +0.5
5,950,322 + -0.2
5,950,322 + -0.7
5,950,322 + -1.6
5,950,323 - -0.2
5,950,323 - -0.5
5,950,430 + +1.8
5,950,431 - +0.9
5,950,451 + -1.2
5,950,481 + -0.6
5,950,481 + -0.8
5,950,481 + -0.7
5,950,481 + -1.6
5,950,482 - +1.2
5,950,493 + -2.2
5,950,493 + -0.2
5,950,506 + -0.6
5,950,507 - -0.8
5,950,523 - -0.8
5,950,566 - +0.2
5,950,569 - +2.5
5,950,569 - -0.1
5,950,794 - -0.8
5,950,794 - -2.4
5,950,794 - +0.2
5,950,794 - -0.2
5,950,796 - +0.8
5,950,796 - -0.2
5,950,796 - -0.8
5,950,796 - -0.2
5,950,796 - -0.2
5,950,796 - -0.8
5,950,798 - -1.4
5,950,798 - -0.1
5,950,798 - -3.1
5,950,894 - -0.7
5,950,902 - -1.4
5,950,902 - -0.2
5,950,906 - +1.2
5,950,906 - +0.8
5,950,908 - -1.6
5,950,908 - -1.2
5,951,085 + -0.8
5,951,085 + -1.8
5,951,085 + -1.8
5,951,086 - -1.1
5,951,086 - +0.2
5,951,086 - +1.3
5,951,086 - +0.1
5,951,086 - +1.0
5,951,086 - -1.1
5,951,088 + -0.1
5,951,089 - -0.6
5,951,089 - +0.8
5,951,089 - +0.4
5,951,089 - +0.6
5,951,089 - -1.2
5,951,089 - +0.2
5,951,089 - -0.5
5,951,121 - -1.4
5,951,136 + -2.1
5,951,150 - -0.8
5,951,154 - -2.4
5,951,154 - +0.0
5,951,239 + AO353_27205 0.27 -1.1
5,951,239 + AO353_27205 0.27 -0.8
5,951,239 + AO353_27205 0.27 -1.8
5,951,240 - AO353_27205 0.27 -1.1
5,951,326 + AO353_27205 0.50 -2.2
5,951,326 + AO353_27205 0.50 -1.7
5,951,326 + AO353_27205 0.50 -0.8
5,951,326 + AO353_27205 0.50 -0.8
5,951,326 + AO353_27205 0.50 +0.6
5,951,326 + AO353_27205 0.50 +0.8
5,951,327 - AO353_27205 0.51 -1.2
5,951,327 - AO353_27205 0.51 -1.6
5,951,394 + AO353_27205 0.69 +2.6
5,951,394 + AO353_27205 0.69 +0.3
5,951,413 + AO353_27205 0.74 -2.1
5,951,413 + AO353_27205 0.74 +3.1
5,951,414 - AO353_27205 0.74 -1.5
5,951,414 - AO353_27205 0.74 +0.3
5,951,414 - AO353_27205 0.74 -1.8
5,951,414 - AO353_27205 0.74 +0.3
5,951,414 - AO353_27205 0.74 -0.8
5,951,414 - AO353_27205 0.74 +0.0
5,951,414 - AO353_27205 0.74 -2.7
5,951,471 + AO353_27205 0.89 +4.2
5,951,486 + -2.6
5,951,486 + +1.3
5,951,486 + -1.8
5,951,486 + +0.4
5,951,487 - +0.1
5,951,487 - -1.1
5,951,487 - -0.2
5,951,487 - +0.9
5,951,509 + +1.3
5,951,509 + +0.4
5,951,539 + -0.5
5,951,578 + +0.2
5,951,579 - +1.2
5,951,596 + -2.4
5,951,597 - +0.5
5,951,597 - -0.8
5,951,597 - +0.5
5,951,608 - +1.8
5,951,833 - AO353_27210 0.20 +1.6
5,951,903 + AO353_27210 0.26 +2.2
5,951,911 + AO353_27210 0.27 +0.2
5,951,914 - AO353_27210 0.27 -1.2
5,951,928 - AO353_27210 0.28 -2.7
5,951,976 + AO353_27210 0.32 -0.5
5,952,098 + AO353_27210 0.43 +0.0
5,952,099 - AO353_27210 0.43 -0.8
5,952,102 + AO353_27210 0.43 -1.2
5,952,103 - AO353_27210 0.43 -1.2
5,952,133 + AO353_27210 0.46 +0.2
5,952,400 - AO353_27210 0.69 +0.0
5,952,420 - -0.8
5,952,420 - AO353_27210 0.71 -0.2
5,952,420 - AO353_27210 0.71 +1.2
5,952,444 + AO353_27210 0.73 +2.0
5,952,444 + AO353_27210 0.73 +0.8
5,952,445 - AO353_27210 0.73 -1.2
5,952,445 - AO353_27210 0.73 +0.0
5,952,445 - AO353_27210 0.73 +2.1
5,952,476 + AO353_27210 0.75 +0.4

Or see this region's nucleotide sequence