Experiment: methylglyoxal 0.009 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_23915 and AO353_23920 are separated by 0 nucleotides AO353_23920 and AO353_23925 overlap by 11 nucleotides AO353_23925 and AO353_23930 are separated by 44 nucleotides AO353_23930 and AO353_23935 are separated by 23 nucleotides
AO353_23915: AO353_23915 - chemotaxis protein CheY, at 5,247,027 to 5,250,494
_23915
AO353_23920: AO353_23920 - chemotaxis protein CheR, at 5,250,495 to 5,251,316
_23920
AO353_23925: AO353_23925 - histidine kinase, at 5,251,306 to 5,252,520
_23925
AO353_23930: AO353_23930 - chemotaxis protein CheY, at 5,252,565 to 5,252,942
_23930
AO353_23935: AO353_23935 - hypothetical protein, at 5,252,966 to 5,254,021
_23935
Position (kb) 5251
5252
5253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5250.488 kb on + strand at 5250.488 kb on + strand at 5250.488 kb on + strand at 5250.489 kb on - strand at 5250.489 kb on - strand at 5250.489 kb on - strand at 5250.492 kb on + strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.493 kb on - strand at 5250.506 kb on + strand at 5250.506 kb on + strand at 5250.507 kb on - strand at 5250.543 kb on + strand at 5250.552 kb on + strand at 5250.552 kb on + strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.553 kb on - strand at 5250.559 kb on - strand at 5250.574 kb on - strand at 5250.784 kb on - strand, within AO353_23920 at 5250.784 kb on - strand, within AO353_23920 at 5250.784 kb on - strand, within AO353_23920 at 5250.834 kb on + strand, within AO353_23920 at 5250.835 kb on - strand, within AO353_23920 at 5250.835 kb on - strand, within AO353_23920 at 5250.963 kb on + strand, within AO353_23920 at 5250.963 kb on + strand, within AO353_23920 at 5250.971 kb on + strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.972 kb on - strand, within AO353_23920 at 5250.975 kb on + strand, within AO353_23920 at 5250.975 kb on + strand, within AO353_23920 at 5250.975 kb on + strand, within AO353_23920 at 5250.976 kb on - strand, within AO353_23920 at 5250.976 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.012 kb on - strand, within AO353_23920 at 5251.014 kb on + strand, within AO353_23920 at 5251.014 kb on + strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.015 kb on - strand, within AO353_23920 at 5251.026 kb on + strand, within AO353_23920 at 5251.254 kb on + strand at 5251.254 kb on + strand at 5251.255 kb on - strand at 5251.255 kb on - strand at 5251.297 kb on - strand at 5251.314 kb on + strand at 5251.314 kb on + strand at 5251.314 kb on + strand at 5251.315 kb on - strand at 5251.315 kb on - strand at 5251.318 kb on - strand at 5251.405 kb on + strand at 5251.405 kb on + strand at 5251.405 kb on + strand at 5251.405 kb on + strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.406 kb on - strand at 5251.588 kb on + strand, within AO353_23925 at 5251.589 kb on - strand, within AO353_23925 at 5251.603 kb on + strand, within AO353_23925 at 5251.632 kb on + strand, within AO353_23925 at 5251.633 kb on - strand, within AO353_23925 at 5251.849 kb on - strand, within AO353_23925 at 5251.849 kb on - strand, within AO353_23925 at 5251.972 kb on - strand, within AO353_23925 at 5252.252 kb on - strand, within AO353_23925 at 5252.252 kb on - strand, within AO353_23925 at 5252.326 kb on - strand, within AO353_23925 at 5252.326 kb on - strand, within AO353_23925 at 5252.382 kb on - strand, within AO353_23925 at 5252.387 kb on + strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.392 kb on - strand, within AO353_23925 at 5252.448 kb on + strand at 5252.462 kb on + strand at 5252.463 kb on - strand at 5252.463 kb on - strand at 5252.542 kb on + strand at 5252.543 kb on - strand at 5252.626 kb on + strand, within AO353_23930 at 5252.627 kb on - strand, within AO353_23930 at 5252.637 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand, within AO353_23930 at 5252.674 kb on + strand at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.675 kb on - strand, within AO353_23930 at 5252.723 kb on + strand, within AO353_23930 at 5252.723 kb on + strand, within AO353_23930 at 5252.768 kb on - strand, within AO353_23930 at 5252.940 kb on + strand at 5252.941 kb on - strand at 5252.961 kb on - strand at 5253.063 kb on + strand at 5253.063 kb on + strand at 5253.063 kb on + strand at 5253.181 kb on - strand, within AO353_23935 at 5253.212 kb on + strand, within AO353_23935 at 5253.213 kb on - strand, within AO353_23935 at 5253.213 kb on - strand, within AO353_23935 at 5253.275 kb on + strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.276 kb on - strand, within AO353_23935 at 5253.486 kb on + strand, within AO353_23935 at 5253.514 kb on + strand, within AO353_23935 at 5253.515 kb on - strand, within AO353_23935
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol% remove 5,250,488 + -0.7 5,250,488 + -0.9 5,250,488 + -0.0 5,250,489 - -0.9 5,250,489 - -1.9 5,250,489 - -0.3 5,250,492 + +1.2 5,250,493 - -0.9 5,250,493 - -1.3 5,250,493 - +0.7 5,250,493 - +0.9 5,250,493 - +0.6 5,250,493 - -0.3 5,250,506 + +0.3 5,250,506 + -0.1 5,250,507 - +1.3 5,250,543 + -2.1 5,250,552 + +2.3 5,250,552 + +0.5 5,250,553 - +1.0 5,250,553 - -1.6 5,250,553 - -2.6 5,250,553 - -0.7 5,250,553 - -0.3 5,250,553 - +0.2 5,250,559 - -2.6 5,250,574 - -0.3 5,250,784 - AO353_23920 0.35 +0.3 5,250,784 - AO353_23920 0.35 -0.9 5,250,784 - AO353_23920 0.35 +1.0 5,250,834 + AO353_23920 0.41 +1.5 5,250,835 - AO353_23920 0.41 +1.1 5,250,835 - AO353_23920 0.41 -0.2 5,250,963 + AO353_23920 0.57 +2.3 5,250,963 + AO353_23920 0.57 -0.1 5,250,971 + AO353_23920 0.58 +1.3 5,250,972 - AO353_23920 0.58 +1.4 5,250,972 - AO353_23920 0.58 -0.5 5,250,972 - AO353_23920 0.58 -0.4 5,250,972 - AO353_23920 0.58 -0.2 5,250,975 + AO353_23920 0.58 +2.7 5,250,975 + AO353_23920 0.58 +0.9 5,250,975 + AO353_23920 0.58 +3.1 5,250,976 - AO353_23920 0.59 -0.9 5,250,976 - AO353_23920 0.59 +0.7 5,251,012 - AO353_23920 0.63 -0.0 5,251,012 - AO353_23920 0.63 +0.5 5,251,012 - AO353_23920 0.63 -0.9 5,251,012 - -0.9 5,251,012 - AO353_23920 0.63 -0.9 5,251,012 - AO353_23920 0.63 +1.7 5,251,012 - AO353_23920 0.63 +1.5 5,251,012 - AO353_23920 0.63 -1.6 5,251,014 + AO353_23920 0.63 +5.1 5,251,014 + AO353_23920 0.63 +2.3 5,251,015 - AO353_23920 0.63 -0.6 5,251,015 - AO353_23920 0.63 -1.3 5,251,015 - AO353_23920 0.63 +1.3 5,251,015 - AO353_23920 0.63 -3.3 5,251,015 - AO353_23920 0.63 +1.7 5,251,026 + AO353_23920 0.65 +0.8 5,251,254 + +3.5 5,251,254 + +2.3 5,251,255 - +0.7 5,251,255 - -0.3 5,251,297 - +1.4 5,251,314 + +2.0 5,251,314 + +1.5 5,251,314 + +1.7 5,251,315 - +0.9 5,251,315 - +1.2 5,251,318 - -0.3 5,251,405 + +0.3 5,251,405 + +1.2 5,251,405 + +1.2 5,251,405 + +2.0 5,251,406 - -1.9 5,251,406 - -3.1 5,251,406 - +0.7 5,251,406 - +0.1 5,251,406 - -0.5 5,251,588 + AO353_23925 0.23 +1.2 5,251,589 - AO353_23925 0.23 -2.0 5,251,603 + AO353_23925 0.24 +1.7 5,251,632 + AO353_23925 0.27 +2.3 5,251,633 - AO353_23925 0.27 -0.1 5,251,849 - AO353_23925 0.45 +0.3 5,251,849 - AO353_23925 0.45 +1.5 5,251,972 - AO353_23925 0.55 +1.3 5,252,252 - AO353_23925 0.78 -1.3 5,252,252 - AO353_23925 0.78 -0.0 5,252,326 - AO353_23925 0.84 -0.3 5,252,326 - AO353_23925 0.84 +0.4 5,252,382 - AO353_23925 0.89 -1.6 5,252,387 + AO353_23925 0.89 +1.1 5,252,392 - AO353_23925 0.89 +0.1 5,252,392 - AO353_23925 0.89 +0.3 5,252,392 - AO353_23925 0.89 -0.6 5,252,392 - AO353_23925 0.89 +0.7 5,252,448 + +2.5 5,252,462 + +2.3 5,252,463 - -0.3 5,252,463 - -0.5 5,252,542 + +1.9 5,252,543 - -0.2 5,252,626 + AO353_23930 0.16 +0.1 5,252,627 - AO353_23930 0.16 -1.6 5,252,637 + AO353_23930 0.19 +0.7 5,252,674 + AO353_23930 0.29 +0.3 5,252,674 + AO353_23930 0.29 -0.6 5,252,674 + AO353_23930 0.29 -0.9 5,252,674 + AO353_23930 0.29 -2.3 5,252,674 + -0.9 5,252,675 - AO353_23930 0.29 -0.3 5,252,675 - AO353_23930 0.29 -0.3 5,252,675 - AO353_23930 0.29 -2.8 5,252,675 - AO353_23930 0.29 -1.9 5,252,723 + AO353_23930 0.42 -0.6 5,252,723 + AO353_23930 0.42 +0.5 5,252,768 - AO353_23930 0.54 +1.1 5,252,940 + -0.7 5,252,941 - -3.0 5,252,961 - -1.9 5,253,063 + -0.3 5,253,063 + +1.5 5,253,063 + +1.0 5,253,181 - AO353_23935 0.20 -1.3 5,253,212 + AO353_23935 0.23 -0.3 5,253,213 - AO353_23935 0.23 -1.3 5,253,213 - AO353_23935 0.23 -3.2 5,253,275 + AO353_23935 0.29 -1.6 5,253,276 - AO353_23935 0.29 +0.4 5,253,276 - AO353_23935 0.29 -0.9 5,253,276 - AO353_23935 0.29 +1.1 5,253,486 + AO353_23935 0.49 -0.7 5,253,514 + AO353_23935 0.52 +0.3 5,253,515 - AO353_23935 0.52 +0.7
Or see this region's nucleotide sequence