Experiment: methylglyoxal 0.009 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_21725 and AO353_21730 are separated by 29 nucleotides AO353_21730 and AO353_21735 are separated by 111 nucleotides AO353_21735 and AO353_21740 are separated by 37 nucleotides
AO353_21725: AO353_21725 - ABC transporter for D-glucosamine, ATPase component (from data) , at 4,762,719 to 4,763,516
_21725
AO353_21730: AO353_21730 - reactive intermediate/imine deaminase, at 4,763,546 to 4,763,935
_21730
AO353_21735: AO353_21735 - IclR family transcriptional regulator, at 4,764,047 to 4,764,811
_21735
AO353_21740: AO353_21740 - D-glucosaminate dehydratase (EC 4.3.1.9) (from data) , at 4,764,849 to 4,766,066
_21740
Position (kb)
4764
4765 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4763.315 kb on - strand, within AO353_21725 at 4763.515 kb on - strand at 4763.515 kb on - strand at 4763.554 kb on + strand at 4763.555 kb on - strand at 4763.573 kb on - strand at 4763.831 kb on + strand, within AO353_21730 at 4763.832 kb on - strand at 4763.944 kb on - strand at 4763.965 kb on + strand at 4763.966 kb on - strand at 4764.185 kb on + strand, within AO353_21735 at 4764.185 kb on + strand, within AO353_21735 at 4764.186 kb on - strand, within AO353_21735 at 4764.186 kb on - strand, within AO353_21735 at 4764.251 kb on + strand, within AO353_21735 at 4764.251 kb on + strand, within AO353_21735 at 4764.251 kb on + strand, within AO353_21735 at 4764.252 kb on - strand, within AO353_21735 at 4764.252 kb on - strand, within AO353_21735 at 4764.269 kb on + strand, within AO353_21735 at 4764.269 kb on + strand, within AO353_21735 at 4764.269 kb on + strand, within AO353_21735 at 4764.392 kb on + strand, within AO353_21735 at 4764.392 kb on + strand, within AO353_21735 at 4764.392 kb on + strand, within AO353_21735 at 4764.746 kb on + strand at 4764.746 kb on + strand at 4764.747 kb on - strand at 4764.747 kb on - strand at 4764.809 kb on + strand at 4764.809 kb on + strand at 4764.810 kb on - strand at 4764.810 kb on - strand at 4764.843 kb on + strand at 4764.843 kb on + strand at 4764.844 kb on - strand at 4764.844 kb on - strand at 4764.844 kb on - strand at 4764.844 kb on - strand at 4765.221 kb on + strand, within AO353_21740 at 4765.222 kb on - strand, within AO353_21740 at 4765.222 kb on - strand, within AO353_21740 at 4765.222 kb on - strand, within AO353_21740 at 4765.480 kb on + strand, within AO353_21740 at 4765.560 kb on + strand, within AO353_21740 at 4765.561 kb on - strand, within AO353_21740 at 4765.635 kb on + strand, within AO353_21740 at 4765.635 kb on + strand, within AO353_21740 at 4765.635 kb on + strand, within AO353_21740 at 4765.635 kb on + strand, within AO353_21740 at 4765.635 kb on + strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.636 kb on - strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.659 kb on + strand, within AO353_21740 at 4765.660 kb on - strand, within AO353_21740 at 4765.660 kb on - strand, within AO353_21740 at 4765.660 kb on - strand, within AO353_21740 at 4765.660 kb on - strand, within AO353_21740 at 4765.660 kb on - strand, within AO353_21740 at 4765.695 kb on - strand, within AO353_21740 at 4765.798 kb on + strand, within AO353_21740 at 4765.798 kb on + strand, within AO353_21740 at 4765.798 kb on + strand, within AO353_21740 at 4765.798 kb on + strand, within AO353_21740 at 4765.799 kb on - strand, within AO353_21740 at 4765.799 kb on - strand, within AO353_21740 at 4765.799 kb on - strand, within AO353_21740 at 4765.799 kb on - strand, within AO353_21740 at 4765.803 kb on + strand, within AO353_21740 at 4765.804 kb on - strand, within AO353_21740
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol% remove 4,763,315 - AO353_21725 0.75 -1.1 4,763,515 - -1.5 4,763,515 - -0.2 4,763,554 + +0.6 4,763,555 - -0.2 4,763,573 - +1.6 4,763,831 + AO353_21730 0.73 +2.0 4,763,832 - +1.4 4,763,944 - +0.9 4,763,965 + -2.4 4,763,966 - -0.8 4,764,185 + AO353_21735 0.18 -0.1 4,764,185 + AO353_21735 0.18 +0.8 4,764,186 - AO353_21735 0.18 -1.2 4,764,186 - AO353_21735 0.18 -0.2 4,764,251 + AO353_21735 0.27 -0.6 4,764,251 + AO353_21735 0.27 -1.8 4,764,251 + AO353_21735 0.27 -2.0 4,764,252 - AO353_21735 0.27 -1.8 4,764,252 - AO353_21735 0.27 -1.5 4,764,269 + AO353_21735 0.29 -0.7 4,764,269 + AO353_21735 0.29 -1.4 4,764,269 + AO353_21735 0.29 -0.2 4,764,392 + AO353_21735 0.45 -1.5 4,764,392 + AO353_21735 0.45 +0.6 4,764,392 + AO353_21735 0.45 -2.2 4,764,746 + -0.8 4,764,746 + -0.6 4,764,747 - +0.8 4,764,747 - +0.8 4,764,809 + -2.0 4,764,809 + +0.8 4,764,810 - -1.7 4,764,810 - -2.8 4,764,843 + +1.4 4,764,843 + +0.5 4,764,844 - -2.2 4,764,844 - -0.8 4,764,844 - +0.8 4,764,844 - +1.7 4,765,221 + AO353_21740 0.31 -0.2 4,765,222 - AO353_21740 0.31 -0.9 4,765,222 - AO353_21740 0.31 -0.8 4,765,222 - AO353_21740 0.31 +0.8 4,765,480 + AO353_21740 0.52 -0.8 4,765,560 + AO353_21740 0.58 -0.4 4,765,561 - AO353_21740 0.58 -1.5 4,765,635 + AO353_21740 0.65 -1.3 4,765,635 + AO353_21740 0.65 +0.8 4,765,635 + AO353_21740 0.65 -0.3 4,765,635 + AO353_21740 0.65 +0.6 4,765,635 + AO353_21740 0.65 -0.8 4,765,636 - AO353_21740 0.65 -0.8 4,765,636 - AO353_21740 0.65 -0.4 4,765,636 - AO353_21740 0.65 -2.0 4,765,636 - AO353_21740 0.65 -1.9 4,765,636 - AO353_21740 0.65 +1.5 4,765,636 - AO353_21740 0.65 +2.4 4,765,636 - AO353_21740 0.65 +1.6 4,765,636 - AO353_21740 0.65 +1.0 4,765,659 + AO353_21740 0.67 -0.2 4,765,659 + AO353_21740 0.67 +1.1 4,765,659 + AO353_21740 0.67 +1.2 4,765,659 + AO353_21740 0.67 -0.3 4,765,659 + AO353_21740 0.67 +0.9 4,765,659 + AO353_21740 0.67 -0.7 4,765,659 + AO353_21740 0.67 +0.8 4,765,659 + AO353_21740 0.67 +0.8 4,765,660 - AO353_21740 0.67 +3.6 4,765,660 - AO353_21740 0.67 -0.5 4,765,660 - AO353_21740 0.67 +1.5 4,765,660 - AO353_21740 0.67 +0.8 4,765,660 - AO353_21740 0.67 -1.8 4,765,695 - AO353_21740 0.69 -0.4 4,765,798 + AO353_21740 0.78 -3.3 4,765,798 + AO353_21740 0.78 -1.2 4,765,798 + AO353_21740 0.78 +0.5 4,765,798 + AO353_21740 0.78 +0.8 4,765,799 - AO353_21740 0.78 -2.2 4,765,799 - AO353_21740 0.78 -0.4 4,765,799 - AO353_21740 0.78 -0.8 4,765,799 - AO353_21740 0.78 -1.2 4,765,803 + AO353_21740 0.78 +3.0 4,765,804 - AO353_21740 0.78 -0.5
Or see this region's nucleotide sequence