Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_20140

Experiment: methylglyoxal 0.009 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAO353_20135 and AO353_20140 are separated by 911 nucleotidesAO353_20140 and AO353_20145 are separated by 127 nucleotides AO353_20135: AO353_20135 - D-alanyl-D-alanine endopeptidase, at 4,427,932 to 4,428,873 _20135 AO353_20140: AO353_20140 - hypothetical protein, at 4,429,785 to 4,430,177 _20140 AO353_20145: AO353_20145 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 4,430,305 to 4,431,159 _20145 Position (kb) 4429 4430 4431Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4428.804 kb on - strandat 4428.831 kb on + strandat 4428.831 kb on + strandat 4428.831 kb on + strandat 4428.831 kb on + strandat 4428.831 kb on + strandat 4428.831 kb on + strandat 4428.831 kb on + strandat 4428.831 kb on + strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.832 kb on - strandat 4428.844 kb on + strandat 4428.899 kb on + strandat 4428.899 kb on + strandat 4428.899 kb on + strandat 4428.899 kb on + strandat 4428.899 kb on + strandat 4428.900 kb on - strandat 4428.900 kb on - strandat 4428.900 kb on - strandat 4428.935 kb on - strandat 4428.942 kb on + strandat 4428.943 kb on - strandat 4428.943 kb on - strandat 4428.943 kb on - strandat 4428.948 kb on + strandat 4428.948 kb on + strandat 4428.949 kb on - strandat 4428.949 kb on - strandat 4428.966 kb on + strandat 4428.966 kb on + strandat 4428.968 kb on + strandat 4428.968 kb on + strandat 4428.968 kb on + strandat 4428.968 kb on + strandat 4428.969 kb on - strandat 4428.969 kb on - strandat 4428.969 kb on - strandat 4428.969 kb on - strandat 4428.969 kb on - strandat 4428.969 kb on - strandat 4428.969 kb on - strandat 4428.969 kb on - strandat 4429.007 kb on - strandat 4429.025 kb on - strandat 4429.086 kb on + strandat 4429.087 kb on - strandat 4429.087 kb on - strandat 4429.087 kb on - strandat 4429.087 kb on - strandat 4429.094 kb on + strandat 4429.095 kb on - strandat 4429.116 kb on + strandat 4429.117 kb on - strandat 4429.144 kb on + strandat 4429.193 kb on - strandat 4429.364 kb on + strandat 4429.428 kb on + strandat 4429.505 kb on + strandat 4429.505 kb on + strandat 4429.560 kb on - strandat 4429.560 kb on - strandat 4429.611 kb on - strandat 4429.611 kb on - strandat 4429.627 kb on + strandat 4429.627 kb on + strandat 4429.628 kb on - strandat 4429.628 kb on - strandat 4429.628 kb on - strandat 4429.659 kb on + strandat 4429.659 kb on + strandat 4429.660 kb on - strandat 4429.660 kb on - strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.677 kb on + strandat 4429.678 kb on - strandat 4429.754 kb on + strandat 4429.779 kb on - strandat 4429.795 kb on + strandat 4429.795 kb on + strandat 4429.861 kb on - strand, within AO353_20140at 4429.867 kb on + strand, within AO353_20140at 4429.941 kb on + strand, within AO353_20140at 4429.947 kb on - strand, within AO353_20140at 4429.947 kb on - strand, within AO353_20140at 4430.015 kb on + strand, within AO353_20140at 4430.036 kb on + strand, within AO353_20140at 4430.037 kb on - strand, within AO353_20140at 4430.060 kb on + strand, within AO353_20140at 4430.060 kb on + strand, within AO353_20140at 4430.094 kb on + strand, within AO353_20140at 4430.095 kb on - strand, within AO353_20140at 4430.096 kb on + strand, within AO353_20140at 4430.244 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol%
remove
4,428,804 - +1.8
4,428,831 + +0.1
4,428,831 + -0.3
4,428,831 + -0.8
4,428,831 + -1.8
4,428,831 + +0.6
4,428,831 + -2.2
4,428,831 + -0.8
4,428,831 + +0.1
4,428,832 - -0.8
4,428,832 - -0.2
4,428,832 - +1.7
4,428,832 - -0.6
4,428,832 - -0.4
4,428,832 - +0.2
4,428,832 - -1.0
4,428,832 - -0.1
4,428,832 - +1.4
4,428,832 - +1.2
4,428,832 - -0.2
4,428,832 - +2.0
4,428,832 - -0.4
4,428,844 + -2.0
4,428,899 + +1.7
4,428,899 + +1.0
4,428,899 + +0.4
4,428,899 + +0.7
4,428,899 + +3.4
4,428,900 - -3.1
4,428,900 - -2.0
4,428,900 - -0.9
4,428,935 - -1.5
4,428,942 + +2.4
4,428,943 - -0.2
4,428,943 - +1.4
4,428,943 - +0.8
4,428,948 + +1.9
4,428,948 + -1.8
4,428,949 - -1.5
4,428,949 - -1.8
4,428,966 + +0.9
4,428,966 + +1.1
4,428,968 + +0.8
4,428,968 + -0.8
4,428,968 + -1.8
4,428,968 + -0.4
4,428,969 - -0.4
4,428,969 - +0.8
4,428,969 - +0.1
4,428,969 - +0.5
4,428,969 - +0.9
4,428,969 - -3.2
4,428,969 - -0.8
4,428,969 - +0.1
4,429,007 - +1.5
4,429,025 - +2.8
4,429,086 + +0.8
4,429,087 - -1.2
4,429,087 - -0.8
4,429,087 - -0.2
4,429,087 - +0.3
4,429,094 + -2.3
4,429,095 - +1.4
4,429,116 + +0.5
4,429,117 - +0.6
4,429,144 + -0.5
4,429,193 - +1.1
4,429,364 + +1.8
4,429,428 + -1.5
4,429,505 + -1.2
4,429,505 + +1.6
4,429,560 - +1.1
4,429,560 - +1.1
4,429,611 - +0.8
4,429,611 - +0.5
4,429,627 + -2.2
4,429,627 + +0.1
4,429,628 - +0.8
4,429,628 - -0.4
4,429,628 - -0.2
4,429,659 + +1.6
4,429,659 + -0.0
4,429,660 - +0.8
4,429,660 - -0.8
4,429,677 + +1.0
4,429,677 + +0.5
4,429,677 + -0.1
4,429,677 + +0.5
4,429,677 + +0.8
4,429,678 - -0.8
4,429,754 + -2.2
4,429,779 - -0.8
4,429,795 + -0.4
4,429,795 + -0.8
4,429,861 - AO353_20140 0.19 -2.2
4,429,867 + AO353_20140 0.21 -2.9
4,429,941 + AO353_20140 0.40 -0.2
4,429,947 - AO353_20140 0.41 -0.8
4,429,947 - AO353_20140 0.41 -0.2
4,430,015 + AO353_20140 0.59 +0.8
4,430,036 + AO353_20140 0.64 -0.2
4,430,037 - AO353_20140 0.64 -1.2
4,430,060 + AO353_20140 0.70 -0.8
4,430,060 + AO353_20140 0.70 -1.2
4,430,094 + AO353_20140 0.79 -2.2
4,430,095 - AO353_20140 0.79 -0.6
4,430,096 + AO353_20140 0.79 +0.8
4,430,244 - -2.9

Or see this region's nucleotide sequence