Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_19735

Experiment: methylglyoxal 0.009 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_19730 and AO353_19735 are separated by 698 nucleotidesAO353_19735 and AO353_19740 are separated by 92 nucleotides AO353_19730: AO353_19730 - filamentous hemagglutinin, at 4,333,035 to 4,337,813 _19730 AO353_19735: AO353_19735 - hypothetical protein, at 4,338,512 to 4,339,294 _19735 AO353_19740: AO353_19740 - MFS transporter, at 4,339,387 to 4,340,538 _19740 Position (kb) 4338 4339 4340Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4337.767 kb on - strandat 4337.767 kb on - strandat 4337.767 kb on - strandat 4337.767 kb on - strandat 4337.812 kb on - strandat 4338.041 kb on - strandat 4338.236 kb on - strandat 4338.342 kb on + strandat 4338.343 kb on - strandat 4338.348 kb on + strandat 4338.349 kb on - strandat 4338.349 kb on - strandat 4338.349 kb on - strandat 4338.390 kb on - strandat 4338.420 kb on + strandat 4338.449 kb on + strandat 4338.449 kb on + strandat 4338.449 kb on + strandat 4338.449 kb on + strandat 4338.449 kb on + strandat 4338.449 kb on + strandat 4338.449 kb on + strandat 4338.449 kb on + strandat 4338.450 kb on - strandat 4338.450 kb on - strandat 4338.473 kb on + strandat 4338.473 kb on + strandat 4338.473 kb on + strandat 4338.473 kb on + strandat 4338.473 kb on + strandat 4338.473 kb on + strandat 4338.474 kb on - strandat 4338.677 kb on + strand, within AO353_19735at 4338.677 kb on + strand, within AO353_19735at 4338.677 kb on + strand, within AO353_19735at 4338.677 kb on + strand, within AO353_19735at 4338.678 kb on - strand, within AO353_19735at 4338.678 kb on - strand, within AO353_19735at 4338.678 kb on - strand, within AO353_19735at 4338.678 kb on - strand, within AO353_19735at 4338.734 kb on + strand, within AO353_19735at 4339.004 kb on + strand, within AO353_19735at 4339.004 kb on + strand, within AO353_19735at 4339.004 kb on + strand, within AO353_19735at 4339.004 kb on + strand, within AO353_19735at 4339.004 kb on + strand, within AO353_19735at 4339.005 kb on - strand, within AO353_19735at 4339.005 kb on - strand, within AO353_19735at 4339.005 kb on - strand, within AO353_19735at 4339.005 kb on - strand, within AO353_19735at 4339.005 kb on - strand, within AO353_19735at 4339.005 kb on - strand, within AO353_19735at 4339.058 kb on + strand, within AO353_19735at 4339.058 kb on + strand, within AO353_19735at 4339.059 kb on - strandat 4339.059 kb on - strand, within AO353_19735at 4339.109 kb on + strand, within AO353_19735at 4339.293 kb on - strandat 4339.380 kb on + strandat 4339.380 kb on + strandat 4339.381 kb on - strandat 4339.381 kb on - strandat 4339.480 kb on - strandat 4339.517 kb on + strand, within AO353_19740at 4339.517 kb on + strand, within AO353_19740at 4339.586 kb on + strand, within AO353_19740at 4339.587 kb on - strand, within AO353_19740at 4339.587 kb on - strand, within AO353_19740at 4339.734 kb on + strand, within AO353_19740at 4339.734 kb on + strand, within AO353_19740at 4339.735 kb on - strand, within AO353_19740at 4339.735 kb on - strand, within AO353_19740at 4339.735 kb on - strand, within AO353_19740at 4339.794 kb on - strand, within AO353_19740at 4339.809 kb on - strand, within AO353_19740at 4339.887 kb on + strand, within AO353_19740at 4339.962 kb on - strand, within AO353_19740at 4339.962 kb on - strand, within AO353_19740at 4340.168 kb on - strand, within AO353_19740

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol%
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4,337,767 - -1.8
4,337,767 - -1.6
4,337,767 - +0.5
4,337,767 - +2.1
4,337,812 - -0.9
4,338,041 - -1.5
4,338,236 - -1.5
4,338,342 + -1.5
4,338,343 - +0.3
4,338,348 + +1.1
4,338,349 - -0.0
4,338,349 - -2.2
4,338,349 - -0.0
4,338,390 - +0.7
4,338,420 + -1.3
4,338,449 + -1.6
4,338,449 + -1.2
4,338,449 + +0.2
4,338,449 + +1.4
4,338,449 + +1.6
4,338,449 + -1.2
4,338,449 + -1.5
4,338,449 + -1.5
4,338,450 - -0.6
4,338,450 - +0.1
4,338,473 + +0.1
4,338,473 + -0.5
4,338,473 + -0.2
4,338,473 + -2.5
4,338,473 + +0.5
4,338,473 + -1.5
4,338,474 - +1.0
4,338,677 + AO353_19735 0.21 +1.0
4,338,677 + AO353_19735 0.21 +0.1
4,338,677 + AO353_19735 0.21 +1.1
4,338,677 + AO353_19735 0.21 +2.7
4,338,678 - AO353_19735 0.21 -1.3
4,338,678 - AO353_19735 0.21 -0.8
4,338,678 - AO353_19735 0.21 +1.1
4,338,678 - AO353_19735 0.21 -1.0
4,338,734 + AO353_19735 0.28 +0.5
4,339,004 + AO353_19735 0.63 +0.0
4,339,004 + AO353_19735 0.63 -0.2
4,339,004 + AO353_19735 0.63 +0.6
4,339,004 + AO353_19735 0.63 +0.4
4,339,004 + AO353_19735 0.63 +1.0
4,339,005 - AO353_19735 0.63 -0.2
4,339,005 - AO353_19735 0.63 +0.5
4,339,005 - AO353_19735 0.63 +0.8
4,339,005 - AO353_19735 0.63 +1.7
4,339,005 - AO353_19735 0.63 -2.5
4,339,005 - AO353_19735 0.63 -1.8
4,339,058 + AO353_19735 0.70 -3.3
4,339,058 + AO353_19735 0.70 -0.9
4,339,059 - -0.8
4,339,059 - AO353_19735 0.70 +1.0
4,339,109 + AO353_19735 0.76 -1.8
4,339,293 - -3.2
4,339,380 + -1.5
4,339,380 + +0.8
4,339,381 - +0.1
4,339,381 - -2.0
4,339,480 - -2.2
4,339,517 + AO353_19740 0.11 -1.2
4,339,517 + AO353_19740 0.11 +0.7
4,339,586 + AO353_19740 0.17 +0.2
4,339,587 - AO353_19740 0.17 +0.2
4,339,587 - AO353_19740 0.17 -1.3
4,339,734 + AO353_19740 0.30 -0.8
4,339,734 + AO353_19740 0.30 -0.6
4,339,735 - AO353_19740 0.30 +2.2
4,339,735 - AO353_19740 0.30 -0.3
4,339,735 - AO353_19740 0.30 +0.7
4,339,794 - AO353_19740 0.35 +0.3
4,339,809 - AO353_19740 0.37 +1.5
4,339,887 + AO353_19740 0.43 +0.1
4,339,962 - AO353_19740 0.50 -1.2
4,339,962 - AO353_19740 0.50 -0.0
4,340,168 - AO353_19740 0.68 -0.3

Or see this region's nucleotide sequence