Experiment: methylglyoxal 0.009 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_18320 and AO353_18325 are separated by 315 nucleotides AO353_18325 and AO353_18330 are separated by 293 nucleotides AO353_18330 and AO353_18335 overlap by 4 nucleotides AO353_18335 and AO353_18340 are separated by 673 nucleotides
AO353_18320: AO353_18320 - hypothetical protein, at 4,039,255 to 4,039,698
_18320
AO353_18325: AO353_18325 - hypothetical protein, at 4,040,014 to 4,040,397
_18325
AO353_18330: AO353_18330 - short-chain dehydrogenase, at 4,040,691 to 4,040,957
_18330
AO353_18335: AO353_18335 - hypothetical protein, at 4,040,954 to 4,041,238
_18335
AO353_18340: AO353_18340 - hypothetical protein, at 4,041,912 to 4,042,520
_18340
Position (kb)
4040
4041 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 4039.716 kb on + strand at 4039.716 kb on + strand at 4039.717 kb on - strand at 4039.717 kb on - strand at 4039.797 kb on - strand at 4039.809 kb on + strand at 4039.822 kb on - strand at 4039.931 kb on + strand at 4039.931 kb on + strand at 4039.932 kb on - strand at 4039.962 kb on - strand at 4039.995 kb on + strand at 4039.995 kb on + strand at 4039.996 kb on - strand at 4040.075 kb on + strand, within AO353_18325 at 4040.075 kb on + strand, within AO353_18325 at 4040.225 kb on + strand, within AO353_18325 at 4040.226 kb on - strand, within AO353_18325 at 4040.226 kb on - strand, within AO353_18325 at 4040.229 kb on + strand, within AO353_18325 at 4040.417 kb on - strand at 4040.480 kb on + strand at 4040.481 kb on - strand at 4040.481 kb on - strand at 4040.481 kb on - strand at 4040.485 kb on - strand at 4040.513 kb on - strand at 4040.552 kb on + strand at 4040.552 kb on + strand at 4040.574 kb on + strand at 4040.574 kb on + strand at 4040.575 kb on - strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.578 kb on + strand at 4040.579 kb on - strand at 4040.579 kb on - strand at 4040.579 kb on - strand at 4040.579 kb on - strand at 4040.638 kb on + strand at 4040.638 kb on + strand at 4040.638 kb on + strand at 4040.638 kb on + strand at 4040.638 kb on + strand at 4040.638 kb on + strand at 4040.639 kb on - strand at 4040.639 kb on - strand at 4040.639 kb on - strand at 4040.639 kb on - strand at 4040.639 kb on - strand at 4040.663 kb on + strand at 4040.663 kb on + strand at 4040.663 kb on + strand at 4040.663 kb on + strand at 4040.663 kb on + strand at 4040.663 kb on + strand at 4040.664 kb on - strand at 4040.664 kb on - strand at 4040.664 kb on - strand at 4040.680 kb on + strand at 4040.680 kb on + strand at 4040.680 kb on + strand at 4040.680 kb on + strand at 4040.680 kb on + strand at 4040.681 kb on - strand at 4040.681 kb on - strand at 4040.687 kb on + strand at 4040.687 kb on + strand at 4040.688 kb on - strand at 4040.688 kb on - strand at 4040.688 kb on - strand at 4040.805 kb on - strand, within AO353_18330 at 4041.009 kb on - strand, within AO353_18335 at 4041.121 kb on - strand, within AO353_18335 at 4041.121 kb on - strand, within AO353_18335 at 4041.180 kb on + strand, within AO353_18335 at 4041.180 kb on + strand, within AO353_18335 at 4041.180 kb on + strand, within AO353_18335 at 4041.181 kb on - strand, within AO353_18335 at 4041.268 kb on + strand at 4041.377 kb on + strand at 4041.377 kb on + strand at 4041.378 kb on - strand at 4041.421 kb on + strand at 4041.422 kb on - strand at 4041.422 kb on - strand at 4041.432 kb on + strand at 4041.440 kb on + strand at 4041.519 kb on + strand at 4041.520 kb on - strand at 4041.520 kb on - strand at 4041.520 kb on - strand at 4041.546 kb on + strand at 4041.546 kb on + strand at 4041.546 kb on + strand at 4041.546 kb on + strand at 4041.546 kb on + strand at 4041.546 kb on + strand at 4041.547 kb on - strand at 4041.547 kb on - strand at 4041.547 kb on - strand at 4041.586 kb on - strand at 4041.704 kb on - strand at 4041.704 kb on - strand at 4041.704 kb on - strand at 4041.850 kb on + strand at 4041.850 kb on + strand at 4041.850 kb on + strand at 4041.850 kb on + strand at 4041.850 kb on + strand at 4041.850 kb on + strand at 4041.886 kb on + strand at 4041.886 kb on + strand at 4041.886 kb on + strand at 4041.887 kb on - strand at 4041.887 kb on - strand at 4041.887 kb on - strand at 4041.933 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol% remove 4,039,716 + -2.1 4,039,716 + -2.5 4,039,717 - -0.6 4,039,717 - -1.5 4,039,797 - -1.6 4,039,809 + +0.9 4,039,822 - +1.0 4,039,931 + -2.1 4,039,931 + -0.1 4,039,932 - -1.4 4,039,962 - -0.1 4,039,995 + -1.1 4,039,995 + -1.4 4,039,996 - +0.9 4,040,075 + AO353_18325 0.16 +1.8 4,040,075 + AO353_18325 0.16 -0.6 4,040,225 + AO353_18325 0.55 -1.6 4,040,226 - AO353_18325 0.55 -1.3 4,040,226 - AO353_18325 0.55 -0.4 4,040,229 + AO353_18325 0.56 -0.3 4,040,417 - +0.2 4,040,480 + -0.2 4,040,481 - -0.6 4,040,481 - -0.1 4,040,481 - -0.1 4,040,485 - +0.1 4,040,513 - -1.6 4,040,552 + -1.5 4,040,552 + -0.1 4,040,574 + -1.5 4,040,574 + +2.9 4,040,575 - +0.6 4,040,578 + +0.1 4,040,578 + -1.8 4,040,578 + -2.6 4,040,578 + -0.5 4,040,578 + -0.8 4,040,578 + +0.5 4,040,578 + -2.6 4,040,578 + -1.1 4,040,578 + +0.1 4,040,578 + +1.0 4,040,578 + -0.6 4,040,578 + -2.8 4,040,578 + -0.6 4,040,578 + -1.4 4,040,579 - -1.5 4,040,579 - +0.9 4,040,579 - +2.5 4,040,579 - -1.5 4,040,638 + -0.2 4,040,638 + -2.2 4,040,638 + +1.1 4,040,638 + -0.1 4,040,638 + +1.4 4,040,638 + -0.4 4,040,639 - -0.4 4,040,639 - -0.6 4,040,639 - +0.6 4,040,639 - +0.0 4,040,639 - -0.1 4,040,663 + +2.8 4,040,663 + -1.1 4,040,663 + +0.7 4,040,663 + -0.1 4,040,663 + -2.4 4,040,663 + -1.1 4,040,664 - -1.1 4,040,664 - +2.8 4,040,664 - -0.6 4,040,680 + +0.1 4,040,680 + +1.9 4,040,680 + -0.9 4,040,680 + +1.1 4,040,680 + -0.6 4,040,681 - +0.7 4,040,681 - +2.0 4,040,687 + -2.8 4,040,687 + -1.5 4,040,688 - +1.9 4,040,688 - -0.2 4,040,688 - +0.4 4,040,805 - AO353_18330 0.43 -0.1 4,041,009 - AO353_18335 0.19 -1.1 4,041,121 - AO353_18335 0.59 +0.2 4,041,121 - AO353_18335 0.59 -1.1 4,041,180 + AO353_18335 0.79 -1.3 4,041,180 + AO353_18335 0.79 -1.1 4,041,180 + AO353_18335 0.79 -1.4 4,041,181 - AO353_18335 0.80 +0.2 4,041,268 + -0.6 4,041,377 + -0.1 4,041,377 + -2.4 4,041,378 - +0.1 4,041,421 + +2.3 4,041,422 - +3.1 4,041,422 - -2.5 4,041,432 + -0.2 4,041,440 + -1.4 4,041,519 + -0.8 4,041,520 - -0.1 4,041,520 - -1.6 4,041,520 - -2.1 4,041,546 + +0.0 4,041,546 + -0.9 4,041,546 + -0.5 4,041,546 + -1.1 4,041,546 + -2.8 4,041,546 + -1.6 4,041,547 - -1.1 4,041,547 - -2.5 4,041,547 - +0.9 4,041,586 - -1.9 4,041,704 - -0.5 4,041,704 - -1.6 4,041,704 - -0.3 4,041,850 + +0.4 4,041,850 + -1.6 4,041,850 + -1.1 4,041,850 + -1.4 4,041,850 + -2.1 4,041,850 + +0.7 4,041,886 + +1.1 4,041,886 + -1.4 4,041,886 + -0.6 4,041,887 - +2.5 4,041,887 - -0.4 4,041,887 - +0.5 4,041,933 - +0.9
Or see this region's nucleotide sequence