Experiment: methylglyoxal 0.009 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_04685 and AO353_04690 are separated by 35 nucleotides AO353_04690 and AO353_04695 are separated by 54 nucleotides
AO353_04685: AO353_04685 - glycosyl transferase, at 1,011,386 to 1,012,876
_04685
AO353_04690: AO353_04690 - hemolysin D, at 1,012,912 to 1,014,081
_04690
AO353_04695: AO353_04695 - alginate biosynthesis protein, at 1,014,136 to 1,015,515
_04695
Position (kb)
1012
1013
1014
1015 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.981 kb on + strand, within AO353_04685 at 1011.982 kb on - strand, within AO353_04685 at 1011.982 kb on - strand, within AO353_04685 at 1011.982 kb on - strand, within AO353_04685 at 1011.982 kb on - strand, within AO353_04685 at 1011.982 kb on - strand, within AO353_04685 at 1011.982 kb on - strand, within AO353_04685 at 1011.982 kb on - strand, within AO353_04685 at 1011.984 kb on + strand, within AO353_04685 at 1011.984 kb on + strand, within AO353_04685 at 1011.984 kb on + strand, within AO353_04685 at 1011.985 kb on - strand, within AO353_04685 at 1011.985 kb on - strand, within AO353_04685 at 1011.985 kb on - strand, within AO353_04685 at 1011.985 kb on - strand, within AO353_04685 at 1011.985 kb on - strand, within AO353_04685 at 1011.988 kb on + strand, within AO353_04685 at 1011.988 kb on + strand, within AO353_04685 at 1011.988 kb on + strand, within AO353_04685 at 1011.988 kb on + strand, within AO353_04685 at 1011.988 kb on + strand, within AO353_04685 at 1012.068 kb on - strand, within AO353_04685 at 1012.068 kb on - strand, within AO353_04685 at 1012.068 kb on - strand, within AO353_04685 at 1012.173 kb on + strand, within AO353_04685 at 1012.173 kb on + strand at 1012.173 kb on + strand, within AO353_04685 at 1012.173 kb on + strand, within AO353_04685 at 1012.174 kb on - strand, within AO353_04685 at 1012.174 kb on - strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.325 kb on + strand, within AO353_04685 at 1012.326 kb on - strand, within AO353_04685 at 1012.326 kb on - strand, within AO353_04685 at 1012.326 kb on - strand, within AO353_04685 at 1012.326 kb on - strand, within AO353_04685 at 1012.412 kb on + strand, within AO353_04685 at 1012.413 kb on - strand, within AO353_04685 at 1012.562 kb on + strand, within AO353_04685 at 1012.563 kb on - strand, within AO353_04685 at 1012.586 kb on + strand, within AO353_04685 at 1012.586 kb on + strand, within AO353_04685 at 1012.587 kb on - strand, within AO353_04685 at 1012.587 kb on - strand, within AO353_04685 at 1012.665 kb on - strand, within AO353_04685 at 1012.679 kb on + strand, within AO353_04685 at 1012.679 kb on + strand, within AO353_04685 at 1012.680 kb on - strand, within AO353_04685 at 1012.680 kb on - strand, within AO353_04685 at 1012.680 kb on - strand, within AO353_04685 at 1012.682 kb on + strand, within AO353_04685 at 1012.682 kb on + strand, within AO353_04685 at 1012.682 kb on + strand, within AO353_04685 at 1012.682 kb on + strand, within AO353_04685 at 1012.682 kb on + strand, within AO353_04685 at 1012.683 kb on - strand, within AO353_04685 at 1012.683 kb on - strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.715 kb on + strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.716 kb on - strand, within AO353_04685 at 1012.894 kb on - strand at 1012.904 kb on + strand at 1012.904 kb on - strand at 1012.905 kb on - strand at 1012.911 kb on + strand at 1012.917 kb on + strand at 1012.937 kb on + strand at 1012.937 kb on + strand at 1012.937 kb on + strand at 1012.937 kb on + strand at 1012.937 kb on + strand at 1012.937 kb on + strand at 1012.937 kb on + strand at 1012.937 kb on + strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1012.938 kb on - strand at 1013.081 kb on + strand, within AO353_04690 at 1013.081 kb on + strand, within AO353_04690 at 1013.081 kb on + strand, within AO353_04690 at 1013.081 kb on + strand, within AO353_04690 at 1013.081 kb on + strand, within AO353_04690 at 1013.081 kb on + strand, within AO353_04690 at 1013.082 kb on - strand, within AO353_04690 at 1013.082 kb on - strand, within AO353_04690 at 1013.082 kb on - strand, within AO353_04690 at 1013.082 kb on - strand, within AO353_04690 at 1013.082 kb on - strand, within AO353_04690 at 1013.162 kb on + strand, within AO353_04690 at 1013.456 kb on - strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.464 kb on + strand, within AO353_04690 at 1013.465 kb on - strand, within AO353_04690 at 1013.465 kb on - strand, within AO353_04690 at 1013.465 kb on - strand, within AO353_04690 at 1013.465 kb on - strand, within AO353_04690 at 1013.465 kb on - strand, within AO353_04690 at 1013.465 kb on - strand, within AO353_04690 at 1013.540 kb on + strand, within AO353_04690 at 1013.540 kb on + strand, within AO353_04690 at 1013.540 kb on + strand, within AO353_04690 at 1013.540 kb on + strand, within AO353_04690 at 1013.540 kb on + strand, within AO353_04690 at 1013.541 kb on - strand, within AO353_04690 at 1013.541 kb on - strand, within AO353_04690 at 1013.541 kb on - strand, within AO353_04690 at 1013.601 kb on + strand, within AO353_04690 at 1013.602 kb on - strand, within AO353_04690 at 1013.752 kb on + strand, within AO353_04690 at 1013.753 kb on - strand, within AO353_04690 at 1013.753 kb on - strand, within AO353_04690 at 1013.753 kb on - strand, within AO353_04690 at 1014.079 kb on + strand at 1014.080 kb on - strand at 1014.111 kb on + strand at 1014.111 kb on + strand at 1014.111 kb on + strand at 1014.112 kb on - strand at 1014.112 kb on - strand at 1014.257 kb on - strand at 1014.257 kb on - strand at 1014.257 kb on - strand at 1014.281 kb on - strand, within AO353_04695 at 1014.361 kb on + strand, within AO353_04695 at 1014.361 kb on + strand, within AO353_04695 at 1014.361 kb on + strand, within AO353_04695 at 1014.361 kb on + strand, within AO353_04695 at 1014.362 kb on - strand, within AO353_04695 at 1014.362 kb on - strand, within AO353_04695 at 1014.362 kb on - strand, within AO353_04695 at 1014.526 kb on + strand, within AO353_04695 at 1014.526 kb on + strand, within AO353_04695 at 1014.526 kb on + strand, within AO353_04695 at 1014.526 kb on + strand, within AO353_04695 at 1014.526 kb on + strand, within AO353_04695 at 1014.527 kb on - strand, within AO353_04695 at 1014.527 kb on - strand, within AO353_04695 at 1014.527 kb on - strand, within AO353_04695 at 1014.631 kb on + strand, within AO353_04695 at 1014.649 kb on + strand, within AO353_04695 at 1014.649 kb on + strand, within AO353_04695 at 1014.649 kb on + strand, within AO353_04695 at 1014.649 kb on + strand, within AO353_04695 at 1014.649 kb on + strand, within AO353_04695 at 1014.650 kb on - strand, within AO353_04695 at 1014.650 kb on - strand, within AO353_04695 at 1014.650 kb on - strand, within AO353_04695 at 1014.650 kb on - strand, within AO353_04695 at 1014.715 kb on + strand, within AO353_04695 at 1014.715 kb on + strand, within AO353_04695 at 1014.715 kb on + strand, within AO353_04695 at 1014.716 kb on - strand, within AO353_04695 at 1014.716 kb on - strand, within AO353_04695 at 1014.716 kb on - strand, within AO353_04695 at 1014.736 kb on + strand at 1014.955 kb on + strand, within AO353_04695 at 1014.956 kb on - strand, within AO353_04695 at 1014.956 kb on - strand, within AO353_04695 at 1014.997 kb on + strand, within AO353_04695 at 1014.998 kb on - strand, within AO353_04695 at 1014.998 kb on - strand, within AO353_04695 at 1015.057 kb on + strand, within AO353_04695 at 1015.057 kb on + strand, within AO353_04695 at 1015.057 kb on + strand, within AO353_04695 at 1015.057 kb on + strand, within AO353_04695 at 1015.058 kb on - strand, within AO353_04695 at 1015.058 kb on - strand, within AO353_04695 at 1015.058 kb on - strand, within AO353_04695 at 1015.060 kb on + strand, within AO353_04695 at 1015.060 kb on + strand, within AO353_04695 at 1015.060 kb on + strand, within AO353_04695 at 1015.060 kb on + strand, within AO353_04695 at 1015.061 kb on - strand, within AO353_04695 at 1015.061 kb on - strand, within AO353_04695 at 1015.061 kb on - strand, within AO353_04695 at 1015.061 kb on - strand, within AO353_04695
Per-strain Table
Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol% remove 1,011,981 + AO353_04685 0.40 +1.1 1,011,981 + AO353_04685 0.40 -0.9 1,011,981 + AO353_04685 0.40 -2.5 1,011,981 + AO353_04685 0.40 -1.1 1,011,981 + AO353_04685 0.40 +0.1 1,011,981 + AO353_04685 0.40 +1.9 1,011,981 + AO353_04685 0.40 +1.5 1,011,981 + AO353_04685 0.40 -0.9 1,011,981 + AO353_04685 0.40 -1.7 1,011,982 - AO353_04685 0.40 -0.6 1,011,982 - AO353_04685 0.40 -0.8 1,011,982 - AO353_04685 0.40 -1.7 1,011,982 - AO353_04685 0.40 -1.7 1,011,982 - AO353_04685 0.40 +1.3 1,011,982 - AO353_04685 0.40 -1.9 1,011,982 - AO353_04685 0.40 +0.8 1,011,984 + AO353_04685 0.40 -0.3 1,011,984 + AO353_04685 0.40 -0.0 1,011,984 + AO353_04685 0.40 +0.1 1,011,985 - AO353_04685 0.40 +1.4 1,011,985 - AO353_04685 0.40 +0.2 1,011,985 - AO353_04685 0.40 -2.2 1,011,985 - AO353_04685 0.40 +0.7 1,011,985 - AO353_04685 0.40 -0.5 1,011,988 + AO353_04685 0.40 -1.1 1,011,988 + AO353_04685 0.40 -0.7 1,011,988 + AO353_04685 0.40 +1.4 1,011,988 + AO353_04685 0.40 -1.6 1,011,988 + AO353_04685 0.40 -3.3 1,012,068 - AO353_04685 0.46 +2.1 1,012,068 - AO353_04685 0.46 +0.7 1,012,068 - AO353_04685 0.46 -0.5 1,012,173 + AO353_04685 0.53 -0.1 1,012,173 + +1.1 1,012,173 + AO353_04685 0.53 -2.4 1,012,173 + AO353_04685 0.53 +1.1 1,012,174 - AO353_04685 0.53 +0.5 1,012,174 - AO353_04685 0.53 +0.6 1,012,325 + AO353_04685 0.63 -0.2 1,012,325 + AO353_04685 0.63 -1.1 1,012,325 + AO353_04685 0.63 -2.4 1,012,325 + AO353_04685 0.63 +0.3 1,012,325 + AO353_04685 0.63 -1.9 1,012,325 + AO353_04685 0.63 -1.2 1,012,325 + AO353_04685 0.63 +1.1 1,012,325 + AO353_04685 0.63 +1.7 1,012,325 + AO353_04685 0.63 -1.9 1,012,326 - AO353_04685 0.63 +1.8 1,012,326 - AO353_04685 0.63 -0.5 1,012,326 - AO353_04685 0.63 +0.3 1,012,326 - AO353_04685 0.63 -3.0 1,012,412 + AO353_04685 0.69 -0.9 1,012,413 - AO353_04685 0.69 +1.8 1,012,562 + AO353_04685 0.79 -0.9 1,012,563 - AO353_04685 0.79 -0.5 1,012,586 + AO353_04685 0.80 -0.4 1,012,586 + AO353_04685 0.80 -0.7 1,012,587 - AO353_04685 0.81 -2.0 1,012,587 - AO353_04685 0.81 -1.6 1,012,665 - AO353_04685 0.86 +1.1 1,012,679 + AO353_04685 0.87 -2.2 1,012,679 + AO353_04685 0.87 -1.7 1,012,680 - AO353_04685 0.87 +0.5 1,012,680 - AO353_04685 0.87 +0.3 1,012,680 - AO353_04685 0.87 -0.9 1,012,682 + AO353_04685 0.87 -2.5 1,012,682 + AO353_04685 0.87 +0.6 1,012,682 + AO353_04685 0.87 -1.2 1,012,682 + AO353_04685 0.87 -0.8 1,012,682 + AO353_04685 0.87 -0.0 1,012,683 - AO353_04685 0.87 +1.9 1,012,683 - AO353_04685 0.87 -0.5 1,012,715 + AO353_04685 0.89 -1.2 1,012,715 + AO353_04685 0.89 -0.9 1,012,715 + AO353_04685 0.89 -0.5 1,012,715 + AO353_04685 0.89 -2.4 1,012,715 + AO353_04685 0.89 -2.8 1,012,715 + AO353_04685 0.89 -0.5 1,012,715 + AO353_04685 0.89 +1.4 1,012,715 + AO353_04685 0.89 +0.4 1,012,716 - AO353_04685 0.89 -0.5 1,012,716 - AO353_04685 0.89 +0.3 1,012,716 - AO353_04685 0.89 -0.9 1,012,716 - AO353_04685 0.89 +3.2 1,012,716 - AO353_04685 0.89 -1.5 1,012,716 - AO353_04685 0.89 -2.4 1,012,716 - AO353_04685 0.89 -1.7 1,012,716 - AO353_04685 0.89 +0.9 1,012,894 - -2.4 1,012,904 + -0.1 1,012,904 - +0.1 1,012,905 - -2.2 1,012,911 + -0.9 1,012,917 + -0.9 1,012,937 + -2.1 1,012,937 + -0.9 1,012,937 + -1.5 1,012,937 + -1.2 1,012,937 + +1.4 1,012,937 + +0.3 1,012,937 + -1.7 1,012,937 + -0.9 1,012,938 - -2.0 1,012,938 - -1.9 1,012,938 - +0.6 1,012,938 - +1.5 1,012,938 - +0.2 1,012,938 - +0.3 1,012,938 - -2.1 1,012,938 - -2.2 1,012,938 - +1.9 1,013,081 + AO353_04690 0.14 -1.4 1,013,081 + AO353_04690 0.14 +0.5 1,013,081 + AO353_04690 0.14 -2.4 1,013,081 + AO353_04690 0.14 -2.2 1,013,081 + AO353_04690 0.14 +0.1 1,013,081 + AO353_04690 0.14 -2.2 1,013,082 - AO353_04690 0.15 +1.1 1,013,082 - AO353_04690 0.15 -1.8 1,013,082 - AO353_04690 0.15 -1.9 1,013,082 - AO353_04690 0.15 -0.5 1,013,082 - AO353_04690 0.15 -1.4 1,013,162 + AO353_04690 0.21 +0.1 1,013,456 - AO353_04690 0.46 -1.2 1,013,464 + AO353_04690 0.47 -1.7 1,013,464 + AO353_04690 0.47 +0.9 1,013,464 + AO353_04690 0.47 +0.6 1,013,464 + AO353_04690 0.47 +0.1 1,013,464 + AO353_04690 0.47 +0.6 1,013,464 + AO353_04690 0.47 +1.2 1,013,464 + AO353_04690 0.47 -2.1 1,013,464 + AO353_04690 0.47 -0.5 1,013,464 + AO353_04690 0.47 +1.3 1,013,464 + AO353_04690 0.47 +0.1 1,013,465 - AO353_04690 0.47 +0.6 1,013,465 - AO353_04690 0.47 -2.1 1,013,465 - AO353_04690 0.47 -1.7 1,013,465 - AO353_04690 0.47 -1.8 1,013,465 - AO353_04690 0.47 -0.9 1,013,465 - AO353_04690 0.47 +3.2 1,013,540 + AO353_04690 0.54 +2.2 1,013,540 + AO353_04690 0.54 -1.2 1,013,540 + AO353_04690 0.54 -1.0 1,013,540 + AO353_04690 0.54 +0.1 1,013,540 + AO353_04690 0.54 -0.9 1,013,541 - AO353_04690 0.54 -1.0 1,013,541 - AO353_04690 0.54 -1.1 1,013,541 - AO353_04690 0.54 -0.5 1,013,601 + AO353_04690 0.59 -2.7 1,013,602 - AO353_04690 0.59 -0.9 1,013,752 + AO353_04690 0.72 -0.1 1,013,753 - AO353_04690 0.72 +0.8 1,013,753 - AO353_04690 0.72 +1.6 1,013,753 - AO353_04690 0.72 +0.2 1,014,079 + -0.8 1,014,080 - +1.1 1,014,111 + +0.8 1,014,111 + +0.8 1,014,111 + -0.5 1,014,112 - +0.2 1,014,112 - +0.1 1,014,257 - +1.2 1,014,257 - -0.4 1,014,257 - -0.4 1,014,281 - AO353_04695 0.11 -0.2 1,014,361 + AO353_04695 0.16 -1.7 1,014,361 + AO353_04695 0.16 -0.8 1,014,361 + AO353_04695 0.16 -0.9 1,014,361 + AO353_04695 0.16 -1.8 1,014,362 - AO353_04695 0.16 -0.7 1,014,362 - AO353_04695 0.16 +1.4 1,014,362 - AO353_04695 0.16 +0.1 1,014,526 + AO353_04695 0.28 -3.3 1,014,526 + AO353_04695 0.28 -0.7 1,014,526 + AO353_04695 0.28 +0.6 1,014,526 + AO353_04695 0.28 +0.8 1,014,526 + AO353_04695 0.28 -0.7 1,014,527 - AO353_04695 0.28 +2.1 1,014,527 - AO353_04695 0.28 +0.3 1,014,527 - AO353_04695 0.28 +0.4 1,014,631 + AO353_04695 0.36 -2.7 1,014,649 + AO353_04695 0.37 -0.7 1,014,649 + AO353_04695 0.37 -0.1 1,014,649 + AO353_04695 0.37 -1.9 1,014,649 + AO353_04695 0.37 -1.2 1,014,649 + AO353_04695 0.37 +0.4 1,014,650 - AO353_04695 0.37 -0.8 1,014,650 - AO353_04695 0.37 +0.9 1,014,650 - AO353_04695 0.37 +1.2 1,014,650 - AO353_04695 0.37 -1.2 1,014,715 + AO353_04695 0.42 -2.8 1,014,715 + AO353_04695 0.42 -2.2 1,014,715 + AO353_04695 0.42 -2.2 1,014,716 - AO353_04695 0.42 -2.6 1,014,716 - AO353_04695 0.42 -0.9 1,014,716 - AO353_04695 0.42 -2.1 1,014,736 + +0.1 1,014,955 + AO353_04695 0.59 -0.9 1,014,956 - AO353_04695 0.59 +1.1 1,014,956 - AO353_04695 0.59 +2.7 1,014,997 + AO353_04695 0.62 -1.7 1,014,998 - AO353_04695 0.62 +0.9 1,014,998 - AO353_04695 0.62 +0.9 1,015,057 + AO353_04695 0.67 -0.5 1,015,057 + AO353_04695 0.67 +1.1 1,015,057 + AO353_04695 0.67 -3.1 1,015,057 + AO353_04695 0.67 -2.2 1,015,058 - AO353_04695 0.67 +0.1 1,015,058 - AO353_04695 0.67 +0.5 1,015,058 - AO353_04695 0.67 -0.2 1,015,060 + AO353_04695 0.67 -2.8 1,015,060 + AO353_04695 0.67 -1.2 1,015,060 + AO353_04695 0.67 -1.5 1,015,060 + AO353_04695 0.67 -0.3 1,015,061 - AO353_04695 0.67 -1.1 1,015,061 - AO353_04695 0.67 +0.1 1,015,061 - AO353_04695 0.67 +0.9 1,015,061 - AO353_04695 0.67 -1.7
Or see this region's nucleotide sequence