Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_01660

Experiment: methylglyoxal 0.009 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_01655 and AO353_01660 are separated by 136 nucleotidesAO353_01660 and AO353_01665 are separated by 232 nucleotides AO353_01655: AO353_01655 - GntR family transcriptional regulator, at 348,140 to 349,546 _01655 AO353_01660: AO353_01660 - short-chain dehydrogenase, at 349,683 to 350,444 _01660 AO353_01665: AO353_01665 - NADP-dependent oxidoreductase, at 350,677 to 351,681 _01665 Position (kb) 349 350 351Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 348.693 kb on + strand, within AO353_01655at 348.693 kb on + strand, within AO353_01655at 348.693 kb on + strand, within AO353_01655at 348.694 kb on - strand, within AO353_01655at 348.694 kb on - strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.716 kb on + strand, within AO353_01655at 348.881 kb on + strand, within AO353_01655at 348.881 kb on + strand, within AO353_01655at 348.882 kb on - strand, within AO353_01655at 348.882 kb on - strand, within AO353_01655at 348.882 kb on - strand, within AO353_01655at 348.983 kb on + strand, within AO353_01655at 349.006 kb on + strand, within AO353_01655at 349.006 kb on + strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.007 kb on - strand, within AO353_01655at 349.045 kb on + strand, within AO353_01655at 349.046 kb on - strand, within AO353_01655at 349.046 kb on - strand, within AO353_01655at 349.046 kb on - strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.048 kb on + strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.049 kb on - strand, within AO353_01655at 349.102 kb on - strand, within AO353_01655at 349.102 kb on - strand, within AO353_01655at 349.113 kb on + strand, within AO353_01655at 349.113 kb on + strand, within AO353_01655at 349.113 kb on + strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.114 kb on - strand, within AO353_01655at 349.117 kb on + strand, within AO353_01655at 349.117 kb on + strand, within AO353_01655at 349.117 kb on + strand, within AO353_01655at 349.161 kb on + strand, within AO353_01655at 349.161 kb on + strand, within AO353_01655at 349.377 kb on + strand, within AO353_01655at 349.377 kb on + strand, within AO353_01655at 349.378 kb on - strand, within AO353_01655at 349.582 kb on + strandat 349.582 kb on + strandat 349.583 kb on - strandat 349.623 kb on - strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.756 kb on + strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.757 kb on - strandat 349.849 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.975 kb on + strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.976 kb on - strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.979 kb on + strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 349.980 kb on - strand, within AO353_01660at 350.068 kb on + strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.069 kb on - strand, within AO353_01660at 350.186 kb on - strand, within AO353_01660at 350.186 kb on - strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.200 kb on + strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.201 kb on - strand, within AO353_01660at 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.448 kb on + strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.449 kb on - strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.488 kb on + strandat 350.489 kb on - strandat 350.489 kb on - strandat 350.489 kb on - strandat 350.489 kb on - strandat 350.518 kb on + strandat 350.518 kb on + strandat 350.518 kb on + strandat 350.518 kb on + strandat 350.519 kb on - strandat 350.519 kb on - strandat 350.541 kb on + strandat 350.541 kb on + strandat 350.541 kb on + strandat 350.542 kb on - strandat 350.542 kb on - strandat 350.575 kb on - strandat 350.598 kb on - strandat 350.641 kb on + strandat 350.752 kb on + strandat 350.752 kb on + strandat 350.752 kb on + strandat 350.752 kb on + strandat 350.753 kb on - strandat 350.809 kb on + strand, within AO353_01665at 350.809 kb on + strand, within AO353_01665at 350.809 kb on + strand, within AO353_01665at 350.809 kb on + strand, within AO353_01665at 350.809 kb on + strand, within AO353_01665at 350.809 kb on + strand, within AO353_01665at 350.809 kb on + strand, within AO353_01665at 350.810 kb on - strand, within AO353_01665at 350.810 kb on - strand, within AO353_01665at 350.810 kb on - strand, within AO353_01665at 350.860 kb on + strand, within AO353_01665at 350.860 kb on + strand, within AO353_01665at 350.860 kb on + strand, within AO353_01665at 350.860 kb on + strand, within AO353_01665at 350.860 kb on + strand, within AO353_01665at 350.861 kb on - strand, within AO353_01665at 350.861 kb on - strand, within AO353_01665at 350.861 kb on - strand, within AO353_01665at 350.861 kb on - strand, within AO353_01665at 350.953 kb on + strand, within AO353_01665at 350.983 kb on + strand, within AO353_01665at 350.983 kb on + strand, within AO353_01665at 350.984 kb on - strand, within AO353_01665at 350.984 kb on - strand, within AO353_01665at 350.984 kb on - strand, within AO353_01665at 350.984 kb on - strand, within AO353_01665at 350.984 kb on - strand, within AO353_01665at 350.984 kb on - strand, within AO353_01665at 350.984 kb on - strand, within AO353_01665at 351.010 kb on + strand, within AO353_01665at 351.010 kb on + strand, within AO353_01665at 351.010 kb on + strand, within AO353_01665at 351.011 kb on - strand, within AO353_01665at 351.011 kb on - strand, within AO353_01665at 351.011 kb on - strand, within AO353_01665at 351.011 kb on - strand, within AO353_01665at 351.011 kb on - strand, within AO353_01665at 351.013 kb on - strand, within AO353_01665at 351.013 kb on - strand, within AO353_01665at 351.046 kb on + strand, within AO353_01665at 351.046 kb on + strand, within AO353_01665at 351.046 kb on + strand, within AO353_01665at 351.083 kb on - strand, within AO353_01665at 351.083 kb on - strand, within AO353_01665at 351.083 kb on - strand, within AO353_01665at 351.083 kb on - strand, within AO353_01665at 351.274 kb on + strand, within AO353_01665at 351.274 kb on + strand, within AO353_01665at 351.275 kb on - strand, within AO353_01665at 351.275 kb on - strand, within AO353_01665at 351.275 kb on - strand, within AO353_01665at 351.326 kb on + strand, within AO353_01665at 351.326 kb on + strand, within AO353_01665at 351.326 kb on + strand, within AO353_01665at 351.327 kb on - strand, within AO353_01665at 351.327 kb on - strand, within AO353_01665at 351.334 kb on + strand, within AO353_01665at 351.334 kb on + strand, within AO353_01665at 351.335 kb on - strand, within AO353_01665at 351.335 kb on - strand, within AO353_01665at 351.335 kb on - strand, within AO353_01665at 351.357 kb on + strand, within AO353_01665at 351.427 kb on + strand, within AO353_01665at 351.427 kb on + strand, within AO353_01665at 351.427 kb on + strand, within AO353_01665at 351.427 kb on + strand, within AO353_01665at 351.428 kb on - strand, within AO353_01665at 351.428 kb on - strand, within AO353_01665at 351.428 kb on - strand, within AO353_01665

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol%
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348,693 + AO353_01655 0.39 -0.3
348,693 + AO353_01655 0.39 +0.9
348,693 + AO353_01655 0.39 +1.9
348,694 - AO353_01655 0.39 +0.6
348,694 - AO353_01655 0.39 +1.5
348,716 + AO353_01655 0.41 +0.7
348,716 + AO353_01655 0.41 +0.3
348,716 + AO353_01655 0.41 +1.3
348,716 + AO353_01655 0.41 -1.9
348,881 + AO353_01655 0.53 -1.3
348,881 + AO353_01655 0.53 +0.9
348,882 - AO353_01655 0.53 -1.1
348,882 - AO353_01655 0.53 +0.7
348,882 - AO353_01655 0.53 +1.4
348,983 + AO353_01655 0.60 +1.1
349,006 + AO353_01655 0.62 -1.4
349,006 + AO353_01655 0.62 -2.3
349,007 - AO353_01655 0.62 +0.7
349,007 - AO353_01655 0.62 +0.2
349,007 - AO353_01655 0.62 -2.1
349,007 - AO353_01655 0.62 +1.1
349,045 + AO353_01655 0.64 +1.4
349,046 - AO353_01655 0.64 +0.7
349,046 - AO353_01655 0.64 -0.4
349,046 - AO353_01655 0.64 +1.4
349,048 + AO353_01655 0.65 +0.9
349,048 + AO353_01655 0.65 +0.9
349,048 + AO353_01655 0.65 -0.4
349,048 + AO353_01655 0.65 -1.4
349,048 + AO353_01655 0.65 -2.3
349,048 + AO353_01655 0.65 -0.3
349,048 + AO353_01655 0.65 +1.5
349,048 + AO353_01655 0.65 -0.2
349,048 + AO353_01655 0.65 +1.6
349,048 + AO353_01655 0.65 +1.0
349,048 + AO353_01655 0.65 +0.0
349,048 + AO353_01655 0.65 +0.9
349,048 + AO353_01655 0.65 -0.4
349,048 + AO353_01655 0.65 -1.6
349,049 - AO353_01655 0.65 -0.7
349,049 - AO353_01655 0.65 -1.0
349,049 - AO353_01655 0.65 +0.1
349,049 - AO353_01655 0.65 -2.7
349,049 - AO353_01655 0.65 -0.7
349,049 - AO353_01655 0.65 +0.9
349,049 - AO353_01655 0.65 +1.6
349,102 - AO353_01655 0.68 +0.2
349,102 - AO353_01655 0.68 -1.3
349,113 + AO353_01655 0.69 +0.5
349,113 + AO353_01655 0.69 -1.7
349,113 + AO353_01655 0.69 +3.5
349,114 - AO353_01655 0.69 -0.7
349,114 - AO353_01655 0.69 +0.2
349,114 - AO353_01655 0.69 +1.1
349,114 - AO353_01655 0.69 +0.9
349,114 - AO353_01655 0.69 +1.1
349,117 + AO353_01655 0.69 +0.1
349,117 + AO353_01655 0.69 +0.2
349,117 + AO353_01655 0.69 -0.8
349,161 + AO353_01655 0.73 +3.2
349,161 + AO353_01655 0.73 -0.2
349,377 + AO353_01655 0.88 -0.3
349,377 + AO353_01655 0.88 -1.7
349,378 - AO353_01655 0.88 +0.2
349,582 + +2.1
349,582 + -0.6
349,583 - -0.7
349,623 - +1.7
349,756 + -1.4
349,756 + +0.5
349,756 + -0.7
349,756 + +1.6
349,756 + -1.4
349,757 - +1.4
349,757 - +1.1
349,757 - -0.3
349,757 - -2.3
349,757 - -0.2
349,757 - -1.4
349,757 - -1.3
349,757 - -0.4
349,757 - -0.1
349,849 + AO353_01660 0.22 +1.0
349,975 + AO353_01660 0.38 +1.0
349,975 + AO353_01660 0.38 -0.3
349,975 + AO353_01660 0.38 -1.1
349,975 + AO353_01660 0.38 -2.3
349,975 + AO353_01660 0.38 -0.9
349,976 - AO353_01660 0.38 +1.5
349,976 - AO353_01660 0.38 +0.5
349,976 - AO353_01660 0.38 +0.1
349,976 - AO353_01660 0.38 +0.3
349,976 - AO353_01660 0.38 +1.1
349,976 - AO353_01660 0.38 +1.4
349,976 - AO353_01660 0.38 +2.1
349,976 - AO353_01660 0.38 +0.6
349,976 - AO353_01660 0.38 +0.6
349,979 + AO353_01660 0.39 -1.1
349,979 + AO353_01660 0.39 +1.0
349,979 + AO353_01660 0.39 -1.4
349,979 + AO353_01660 0.39 -0.6
349,980 - AO353_01660 0.39 -1.1
349,980 - AO353_01660 0.39 -0.9
349,980 - AO353_01660 0.39 -0.4
349,980 - AO353_01660 0.39 -3.1
349,980 - AO353_01660 0.39 -0.2
349,980 - AO353_01660 0.39 +1.1
350,068 + AO353_01660 0.51 -0.4
350,069 - AO353_01660 0.51 -2.3
350,069 - AO353_01660 0.51 -1.1
350,069 - AO353_01660 0.51 +2.2
350,069 - AO353_01660 0.51 -2.1
350,069 - AO353_01660 0.51 -1.4
350,186 - AO353_01660 0.66 +0.1
350,186 - AO353_01660 0.66 +2.0
350,200 + AO353_01660 0.68 +1.9
350,200 + AO353_01660 0.68 -2.8
350,200 + AO353_01660 0.68 +1.2
350,200 + AO353_01660 0.68 +0.4
350,200 + AO353_01660 0.68 -0.4
350,200 + AO353_01660 0.68 -2.2
350,200 + AO353_01660 0.68 +0.9
350,200 + AO353_01660 0.68 +0.6
350,200 + AO353_01660 0.68 +0.5
350,200 + AO353_01660 0.68 +2.2
350,200 + AO353_01660 0.68 -1.9
350,201 - AO353_01660 0.68 -0.1
350,201 - AO353_01660 0.68 +0.4
350,201 - AO353_01660 0.68 +1.3
350,201 - AO353_01660 0.68 -0.4
350,201 - AO353_01660 0.68 -1.6
350,201 - AO353_01660 0.68 -0.1
350,201 - AO353_01660 0.68 -0.1
350,201 - AO353_01660 0.68 -0.4
350,201 - AO353_01660 0.68 -0.5
350,448 + +2.7
350,448 + -0.1
350,448 + +0.2
350,448 + -1.4
350,448 + -1.1
350,448 + -0.5
350,448 + -1.1
350,448 + -0.6
350,449 - +2.1
350,449 - +0.8
350,449 - +1.3
350,449 - -1.4
350,449 - +1.9
350,449 - +1.0
350,449 - -1.1
350,449 - +0.6
350,488 + +1.8
350,488 + -0.7
350,488 + +0.4
350,488 + -1.8
350,488 + -0.7
350,488 + -0.1
350,489 - -0.7
350,489 - +0.6
350,489 - -0.1
350,489 - -0.1
350,518 + +1.9
350,518 + +0.5
350,518 + +0.3
350,518 + -0.4
350,519 - -1.0
350,519 - +1.5
350,541 + +1.6
350,541 + -0.7
350,541 + +0.9
350,542 - +0.5
350,542 - +0.9
350,575 - -1.1
350,598 - +0.6
350,641 + -0.7
350,752 + -0.4
350,752 + +1.6
350,752 + +1.3
350,752 + +1.6
350,753 - -1.0
350,809 + AO353_01665 0.13 -3.0
350,809 + AO353_01665 0.13 +0.4
350,809 + AO353_01665 0.13 -2.4
350,809 + AO353_01665 0.13 -0.1
350,809 + AO353_01665 0.13 -1.4
350,809 + AO353_01665 0.13 +0.7
350,809 + AO353_01665 0.13 -1.1
350,810 - AO353_01665 0.13 -1.1
350,810 - AO353_01665 0.13 -1.1
350,810 - AO353_01665 0.13 -2.4
350,860 + AO353_01665 0.18 -0.4
350,860 + AO353_01665 0.18 +1.7
350,860 + AO353_01665 0.18 -0.3
350,860 + AO353_01665 0.18 -0.7
350,860 + AO353_01665 0.18 +1.0
350,861 - AO353_01665 0.18 +0.9
350,861 - AO353_01665 0.18 -0.9
350,861 - AO353_01665 0.18 -2.3
350,861 - AO353_01665 0.18 -1.7
350,953 + AO353_01665 0.27 +1.1
350,983 + AO353_01665 0.30 -1.2
350,983 + AO353_01665 0.30 +0.4
350,984 - AO353_01665 0.31 +2.5
350,984 - AO353_01665 0.31 +0.5
350,984 - AO353_01665 0.31 -1.4
350,984 - AO353_01665 0.31 -1.4
350,984 - AO353_01665 0.31 -0.2
350,984 - AO353_01665 0.31 +0.1
350,984 - AO353_01665 0.31 +1.3
351,010 + AO353_01665 0.33 -0.1
351,010 + AO353_01665 0.33 +1.6
351,010 + AO353_01665 0.33 -0.7
351,011 - AO353_01665 0.33 +1.5
351,011 - AO353_01665 0.33 -1.3
351,011 - AO353_01665 0.33 -1.6
351,011 - AO353_01665 0.33 +0.7
351,011 - AO353_01665 0.33 -1.4
351,013 - AO353_01665 0.33 -0.1
351,013 - AO353_01665 0.33 -1.6
351,046 + AO353_01665 0.37 +0.4
351,046 + AO353_01665 0.37 +0.4
351,046 + AO353_01665 0.37 +1.7
351,083 - AO353_01665 0.40 -2.6
351,083 - AO353_01665 0.40 -0.8
351,083 - AO353_01665 0.40 +0.3
351,083 - AO353_01665 0.40 +0.1
351,274 + AO353_01665 0.59 +0.9
351,274 + AO353_01665 0.59 -0.1
351,275 - AO353_01665 0.60 -0.7
351,275 - AO353_01665 0.60 +0.3
351,275 - AO353_01665 0.60 -1.1
351,326 + AO353_01665 0.65 -1.8
351,326 + AO353_01665 0.65 -1.1
351,326 + AO353_01665 0.65 -1.9
351,327 - AO353_01665 0.65 +3.2
351,327 - AO353_01665 0.65 -3.0
351,334 + AO353_01665 0.65 +0.8
351,334 + AO353_01665 0.65 -1.1
351,335 - AO353_01665 0.65 +0.9
351,335 - AO353_01665 0.65 -0.1
351,335 - AO353_01665 0.65 -0.2
351,357 + AO353_01665 0.68 +0.5
351,427 + AO353_01665 0.75 +0.6
351,427 + AO353_01665 0.75 +0.3
351,427 + AO353_01665 0.75 +0.3
351,427 + AO353_01665 0.75 +0.2
351,428 - AO353_01665 0.75 -0.1
351,428 - AO353_01665 0.75 -1.4
351,428 - AO353_01665 0.75 -0.8

Or see this region's nucleotide sequence