Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_00675

Experiment: methylglyoxal 0.009 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_00670 and AO353_00675 are separated by 205 nucleotidesAO353_00675 and AO353_00680 are separated by 322 nucleotidesAO353_00680 and AO353_00685 are separated by 67 nucleotides AO353_00670: AO353_00670 - acyl-CoA dehydrogenase, at 141,640 to 142,788 _00670 AO353_00675: AO353_00675 - recombination protein RecR, at 142,994 to 143,596 _00675 AO353_00680: AO353_00680 - nucleoid-associated protein, at 143,919 to 144,257 _00680 AO353_00685: AO353_00685 - DNA polymerase III subunit gamma/tau, at 144,325 to 146,433 _00685 Position (kb) 142 143 144Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 142.069 kb on - strand, within AO353_00670at 142.278 kb on + strand, within AO353_00670at 142.278 kb on + strand, within AO353_00670at 142.279 kb on - strand, within AO353_00670at 142.281 kb on - strand, within AO353_00670at 142.337 kb on + strand, within AO353_00670at 142.337 kb on + strand, within AO353_00670at 142.337 kb on + strand, within AO353_00670at 142.338 kb on - strand, within AO353_00670at 142.338 kb on - strand, within AO353_00670at 142.338 kb on - strand, within AO353_00670at 142.655 kb on + strand, within AO353_00670at 142.656 kb on - strand, within AO353_00670at 142.656 kb on - strand, within AO353_00670at 142.769 kb on + strandat 142.770 kb on - strandat 142.770 kb on - strandat 142.770 kb on - strandat 142.770 kb on - strandat 142.770 kb on - strandat 142.819 kb on + strandat 142.819 kb on + strandat 142.922 kb on + strandat 142.922 kb on + strandat 142.922 kb on + strandat 142.922 kb on + strandat 142.923 kb on - strandat 142.932 kb on + strandat 142.932 kb on + strandat 142.932 kb on + strandat 142.995 kb on + strandat 142.995 kb on + strandat 142.995 kb on + strandat 142.995 kb on + strandat 143.110 kb on + strand, within AO353_00675at 143.111 kb on - strand, within AO353_00675at 143.133 kb on + strand, within AO353_00675at 143.133 kb on + strand, within AO353_00675at 143.133 kb on + strand, within AO353_00675at 143.133 kb on + strand, within AO353_00675at 143.134 kb on - strand, within AO353_00675at 143.134 kb on - strand, within AO353_00675at 143.134 kb on - strand, within AO353_00675at 143.134 kb on - strand, within AO353_00675at 143.134 kb on - strand, within AO353_00675at 143.195 kb on - strand, within AO353_00675at 143.195 kb on - strand, within AO353_00675at 143.289 kb on + strand, within AO353_00675at 143.290 kb on - strand, within AO353_00675at 143.323 kb on - strand, within AO353_00675at 143.323 kb on - strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.354 kb on + strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.355 kb on - strand, within AO353_00675at 143.515 kb on + strand, within AO353_00675at 143.516 kb on - strand, within AO353_00675at 143.614 kb on + strandat 143.614 kb on + strandat 143.614 kb on + strandat 143.614 kb on + strandat 143.615 kb on - strandat 143.615 kb on - strandat 143.615 kb on - strandat 143.632 kb on + strandat 143.633 kb on - strandat 143.633 kb on - strandat 143.634 kb on + strandat 143.634 kb on + strandat 143.748 kb on + strandat 143.748 kb on + strandat 143.749 kb on - strandat 143.780 kb on - strandat 143.896 kb on - strandat 144.141 kb on - strand, within AO353_00680at 144.276 kb on - strandat 144.276 kb on - strandat 144.276 kb on - strandat 144.276 kb on - strandat 144.324 kb on - strandat 144.324 kb on - strandat 144.324 kb on - strandat 144.324 kb on - strandat 144.326 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction methylglyoxal 0.009 vol%
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142,069 - AO353_00670 0.37 +0.0
142,278 + AO353_00670 0.56 +0.4
142,278 + AO353_00670 0.56 -1.0
142,279 - AO353_00670 0.56 +0.5
142,281 - AO353_00670 0.56 -0.5
142,337 + AO353_00670 0.61 -0.4
142,337 + AO353_00670 0.61 -1.9
142,337 + AO353_00670 0.61 -0.1
142,338 - AO353_00670 0.61 -0.9
142,338 - AO353_00670 0.61 -1.1
142,338 - AO353_00670 0.61 -1.6
142,655 + AO353_00670 0.88 +0.9
142,656 - AO353_00670 0.88 -2.1
142,656 - AO353_00670 0.88 +0.1
142,769 + +0.3
142,770 - -0.4
142,770 - -0.9
142,770 - -1.6
142,770 - -2.7
142,770 - +0.2
142,819 + -0.9
142,819 + -2.8
142,922 + -2.1
142,922 + +0.4
142,922 + -1.1
142,922 + -0.1
142,923 - +1.4
142,932 + -1.7
142,932 + +0.3
142,932 + -0.4
142,995 + +0.3
142,995 + +3.3
142,995 + +0.9
142,995 + +0.5
143,110 + AO353_00675 0.19 -2.1
143,111 - AO353_00675 0.19 -0.1
143,133 + AO353_00675 0.23 -1.5
143,133 + AO353_00675 0.23 -0.7
143,133 + AO353_00675 0.23 -1.1
143,133 + AO353_00675 0.23 -1.7
143,134 - AO353_00675 0.23 -1.4
143,134 - AO353_00675 0.23 -1.1
143,134 - AO353_00675 0.23 -0.5
143,134 - AO353_00675 0.23 +0.1
143,134 - AO353_00675 0.23 +0.1
143,195 - AO353_00675 0.33 -2.5
143,195 - AO353_00675 0.33 -1.1
143,289 + AO353_00675 0.49 -1.1
143,290 - AO353_00675 0.49 -0.0
143,323 - AO353_00675 0.55 -2.1
143,323 - AO353_00675 0.55 +0.9
143,354 + AO353_00675 0.60 +0.1
143,354 + AO353_00675 0.60 +0.9
143,354 + AO353_00675 0.60 +0.5
143,354 + AO353_00675 0.60 -0.9
143,354 + AO353_00675 0.60 -1.1
143,355 - AO353_00675 0.60 -0.7
143,355 - AO353_00675 0.60 -0.6
143,355 - AO353_00675 0.60 -0.7
143,355 - AO353_00675 0.60 +0.5
143,515 + AO353_00675 0.86 -3.4
143,516 - AO353_00675 0.87 -0.5
143,614 + -0.3
143,614 + -0.9
143,614 + -1.9
143,614 + -2.8
143,615 - +0.4
143,615 - -0.4
143,615 - +0.9
143,632 + -0.4
143,633 - -0.1
143,633 - +1.5
143,634 + -1.7
143,634 + -0.9
143,748 + -0.0
143,748 + +3.2
143,749 - +1.2
143,780 - +0.9
143,896 - -1.1
144,141 - AO353_00680 0.65 +1.5
144,276 - -1.7
144,276 - +0.8
144,276 - -1.1
144,276 - -0.4
144,324 - -0.1
144,324 - -1.5
144,324 - +0.9
144,324 - +0.3
144,326 + +1.0

Or see this region's nucleotide sequence