Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2349

Experiment: MoYLS4 with Vanillin 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2348 and DvMF_2349 are separated by 32 nucleotidesDvMF_2349 and DvMF_2350 are separated by 217 nucleotides DvMF_2348: DvMF_2348 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,958,252 to 2,959,163 _2348 DvMF_2349: DvMF_2349 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 2,959,196 to 2,960,041 _2349 DvMF_2350: DvMF_2350 - diguanylate cyclase with PAS/PAC and GAF sensors (RefSeq), at 2,960,259 to 2,963,261 _2350 Position (kb) 2959 2960 2961Strain fitness (log2 ratio) -2 -1 0 1at 2958.241 kb on + strandat 2958.563 kb on - strand, within DvMF_2348at 2958.596 kb on - strand, within DvMF_2348at 2958.694 kb on - strand, within DvMF_2348at 2958.731 kb on + strand, within DvMF_2348at 2958.759 kb on + strand, within DvMF_2348at 2958.767 kb on - strand, within DvMF_2348at 2958.780 kb on + strand, within DvMF_2348at 2958.897 kb on + strand, within DvMF_2348at 2959.121 kb on - strandat 2959.430 kb on + strand, within DvMF_2349at 2959.438 kb on - strand, within DvMF_2349at 2959.478 kb on - strand, within DvMF_2349at 2959.478 kb on - strand, within DvMF_2349at 2959.531 kb on - strand, within DvMF_2349at 2959.907 kb on - strand, within DvMF_2349at 2960.012 kb on - strandat 2960.034 kb on + strandat 2960.233 kb on + strandat 2960.390 kb on + strandat 2960.695 kb on + strand, within DvMF_2350at 2960.935 kb on + strand, within DvMF_2350at 2961.038 kb on + strand, within DvMF_2350

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 5 mM
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2,958,241 + -0.3
2,958,563 - DvMF_2348 0.34 -0.2
2,958,596 - DvMF_2348 0.38 -0.3
2,958,694 - DvMF_2348 0.48 -0.3
2,958,731 + DvMF_2348 0.53 -0.4
2,958,759 + DvMF_2348 0.56 +0.3
2,958,767 - DvMF_2348 0.56 -0.4
2,958,780 + DvMF_2348 0.58 +0.8
2,958,897 + DvMF_2348 0.71 -0.1
2,959,121 - -0.5
2,959,430 + DvMF_2349 0.28 -0.4
2,959,438 - DvMF_2349 0.29 -0.1
2,959,478 - DvMF_2349 0.33 -0.1
2,959,478 - DvMF_2349 0.33 -0.6
2,959,531 - DvMF_2349 0.40 +0.2
2,959,907 - DvMF_2349 0.84 -0.4
2,960,012 - -0.0
2,960,034 + -0.8
2,960,233 + -1.9
2,960,390 + -0.3
2,960,695 + DvMF_2350 0.15 -0.1
2,960,935 + DvMF_2350 0.23 +0.1
2,961,038 + DvMF_2350 0.26 -0.4

Or see this region's nucleotide sequence