Experiment: MoYLS4 with Vanillin 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2249 and DvMF_2250 are separated by 384 nucleotides DvMF_2250 and DvMF_2251 are separated by 314 nucleotides DvMF_2251 and DvMF_2252 overlap by 4 nucleotides
DvMF_2249: DvMF_2249 - signal transduction histidine kinase, nitrogen specific, NtrB (RefSeq), at 2,824,044 to 2,826,359
_2249
DvMF_2250: DvMF_2250 - membrane protein involved in aromatic hydrocarbon degradation (RefSeq), at 2,826,744 to 2,827,967
_2250
DvMF_2251: DvMF_2251 - hypothetical protein (RefSeq), at 2,828,282 to 2,828,776
_2251
DvMF_2252: DvMF_2252 - DEAD/DEAH box helicase domain protein (RefSeq), at 2,828,773 to 2,831,745
_2252
Position (kb)
2826
2827
2828 Strain fitness (log2 ratio)
-1
0
1 at 2826.225 kb on + strand at 2826.362 kb on - strand at 2826.490 kb on + strand at 2826.516 kb on + strand at 2826.528 kb on + strand at 2826.604 kb on + strand at 2826.839 kb on + strand at 2827.047 kb on - strand, within DvMF_2250 at 2827.047 kb on - strand, within DvMF_2250 at 2827.072 kb on - strand, within DvMF_2250 at 2827.174 kb on + strand, within DvMF_2250 at 2827.445 kb on - strand, within DvMF_2250 at 2827.554 kb on + strand, within DvMF_2250 at 2827.688 kb on - strand, within DvMF_2250 at 2827.745 kb on - strand, within DvMF_2250 at 2827.785 kb on + strand, within DvMF_2250 at 2827.801 kb on + strand, within DvMF_2250 at 2827.809 kb on - strand, within DvMF_2250 at 2828.090 kb on - strand at 2828.415 kb on + strand, within DvMF_2251 at 2828.575 kb on - strand, within DvMF_2251 at 2828.597 kb on - strand, within DvMF_2251 at 2828.764 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 5 mM remove 2,826,225 + +0.7 2,826,362 - -0.3 2,826,490 + +0.7 2,826,516 + -0.1 2,826,528 + -0.3 2,826,604 + -0.2 2,826,839 + -0.5 2,827,047 - DvMF_2250 0.25 -0.7 2,827,047 - DvMF_2250 0.25 -0.4 2,827,072 - DvMF_2250 0.27 -0.6 2,827,174 + DvMF_2250 0.35 -1.0 2,827,445 - DvMF_2250 0.57 -0.1 2,827,554 + DvMF_2250 0.66 -0.6 2,827,688 - DvMF_2250 0.77 -0.5 2,827,745 - DvMF_2250 0.82 -0.9 2,827,785 + DvMF_2250 0.85 -0.3 2,827,801 + DvMF_2250 0.86 -0.5 2,827,809 - DvMF_2250 0.87 -0.5 2,828,090 - -0.5 2,828,415 + DvMF_2251 0.27 -0.4 2,828,575 - DvMF_2251 0.59 -0.7 2,828,597 - DvMF_2251 0.64 -0.2 2,828,764 + -0.7
Or see this region's nucleotide sequence