Experiment: MoYLS4 with Vanillin 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1234 and DvMF_1235 are separated by 55 nucleotides DvMF_1235 and DvMF_1236 are separated by 134 nucleotides DvMF_1236 and DvMF_1237 are separated by 304 nucleotides DvMF_1237 and DvMF_1238 are separated by 98 nucleotides
DvMF_1234: DvMF_1234 - methionine-R-sulfoxide reductase (RefSeq), at 1,522,581 to 1,523,453
_1234
DvMF_1235: DvMF_1235 - hypothetical protein (RefSeq), at 1,523,509 to 1,523,808
_1235
DvMF_1236: DvMF_1236 - hypothetical protein (RefSeq), at 1,523,943 to 1,524,692
_1236
DvMF_1237: DvMF_1237 - CreA family protein (RefSeq), at 1,524,997 to 1,525,536
_1237
DvMF_1238: DvMF_1238 - spermine synthase (RefSeq), at 1,525,635 to 1,527,209
_1238
Position (kb)
1523
1524
1525 Strain fitness (log2 ratio)
-1
0
1 at 1523.062 kb on - strand, within DvMF_1234 at 1523.292 kb on - strand, within DvMF_1234 at 1523.483 kb on + strand at 1523.501 kb on - strand at 1523.527 kb on - strand at 1524.021 kb on - strand, within DvMF_1236 at 1524.035 kb on + strand, within DvMF_1236 at 1524.884 kb on - strand at 1525.011 kb on + strand at 1525.291 kb on - strand, within DvMF_1237 at 1525.383 kb on - strand, within DvMF_1237 at 1525.536 kb on + strand at 1525.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 5 mM remove 1,523,062 - DvMF_1234 0.55 -0.3 1,523,292 - DvMF_1234 0.81 -0.7 1,523,483 + -0.6 1,523,501 - -0.2 1,523,527 - -0.7 1,524,021 - DvMF_1236 0.10 +0.9 1,524,035 + DvMF_1236 0.12 -0.0 1,524,884 - -0.4 1,525,011 + -0.4 1,525,291 - DvMF_1237 0.54 -0.3 1,525,383 - DvMF_1237 0.71 -0.3 1,525,536 + -0.0 1,525,653 + -0.4
Or see this region's nucleotide sequence