Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1120

Experiment: MoYLS4 with Vanillin 5 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_1119 and DvMF_1120 are separated by 482 nucleotidesDvMF_1120 and DvMF_1121 are separated by 872 nucleotides DvMF_1119: DvMF_1119 - sodium/hydrogen exchanger (RefSeq), at 1,373,036 to 1,375,261 _1119 DvMF_1120: DvMF_1120 - hypothetical protein (RefSeq), at 1,375,744 to 1,376,295 _1120 DvMF_1121: DvMF_1121 - hypothetical protein (RefSeq), at 1,377,168 to 1,377,749 _1121 Position (kb) 1375 1376 1377Strain fitness (log2 ratio) -1 0 1 2at 1374.979 kb on - strand, within DvMF_1119at 1375.064 kb on - strandat 1375.077 kb on - strandat 1375.118 kb on - strandat 1375.128 kb on - strandat 1375.128 kb on - strandat 1375.154 kb on - strandat 1375.227 kb on - strandat 1375.245 kb on + strandat 1375.856 kb on - strand, within DvMF_1120at 1376.096 kb on - strand, within DvMF_1120at 1376.398 kb on - strandat 1376.656 kb on + strandat 1376.824 kb on + strandat 1377.060 kb on + strandat 1377.061 kb on + strandat 1377.254 kb on + strand, within DvMF_1121

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 5 mM
remove
1,374,979 - DvMF_1119 0.87 -0.1
1,375,064 - +0.0
1,375,077 - +0.0
1,375,118 - -0.5
1,375,128 - -0.6
1,375,128 - +0.0
1,375,154 - +0.4
1,375,227 - -1.7
1,375,245 + +0.2
1,375,856 - DvMF_1120 0.20 +0.9
1,376,096 - DvMF_1120 0.64 +0.3
1,376,398 - +0.4
1,376,656 + +1.9
1,376,824 + -0.2
1,377,060 + -0.3
1,377,061 + -0.5
1,377,254 + DvMF_1121 0.15 +0.1

Or see this region's nucleotide sequence