Experiment: MoYLS4 with Vanillin 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0619 and DvMF_0620 overlap by 4 nucleotides DvMF_0620 and DvMF_0621 are separated by 294 nucleotides DvMF_0621 and DvMF_0622 are separated by 628 nucleotides
DvMF_0619: DvMF_0619 - CheA signal transduction histidine kinase (RefSeq), at 738,048 to 740,432
_0619
DvMF_0620: DvMF_0620 - CheW protein (RefSeq), at 740,429 to 741,067
_0620
DvMF_0621: DvMF_0621 - methyl-accepting chemotaxis sensory transducer (RefSeq), at 741,362 to 743,545
_0621
DvMF_0622: DvMF_0622 - transcriptional regulator, BadM/Rrf2 family (RefSeq), at 744,174 to 744,716
_0622
Position (kb) 741
742
743
744 Strain fitness (log2 ratio) -1
0
1 at 740.573 kb on - strand, within DvMF_0620 at 740.865 kb on + strand, within DvMF_0620 at 741.072 kb on - strand at 741.175 kb on - strand at 741.629 kb on + strand, within DvMF_0621 at 741.763 kb on + strand, within DvMF_0621 at 741.782 kb on - strand, within DvMF_0621 at 742.109 kb on - strand, within DvMF_0621 at 742.166 kb on + strand, within DvMF_0621 at 742.474 kb on + strand, within DvMF_0621 at 742.520 kb on + strand, within DvMF_0621 at 742.571 kb on - strand, within DvMF_0621 at 742.844 kb on + strand, within DvMF_0621 at 742.857 kb on - strand, within DvMF_0621 at 742.920 kb on + strand, within DvMF_0621 at 742.928 kb on - strand, within DvMF_0621 at 743.171 kb on + strand, within DvMF_0621 at 743.553 kb on + strand at 743.553 kb on + strand at 743.718 kb on + strand at 743.751 kb on - strand at 744.299 kb on - strand, within DvMF_0622
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 5 mM remove 740,573 - DvMF_0620 0.23 +0.1 740,865 + DvMF_0620 0.68 +1.0 741,072 - -0.1 741,175 - +0.2 741,629 + DvMF_0621 0.12 +0.2 741,763 + DvMF_0621 0.18 -0.4 741,782 - DvMF_0621 0.19 -0.1 742,109 - DvMF_0621 0.34 +0.1 742,166 + DvMF_0621 0.37 -0.1 742,474 + DvMF_0621 0.51 +0.3 742,520 + DvMF_0621 0.53 -1.2 742,571 - DvMF_0621 0.55 -0.8 742,844 + DvMF_0621 0.68 +1.0 742,857 - DvMF_0621 0.68 +0.1 742,920 + DvMF_0621 0.71 +0.1 742,928 - DvMF_0621 0.72 +0.4 743,171 + DvMF_0621 0.83 +0.2 743,553 + -0.4 743,553 + -0.2 743,718 + -0.3 743,751 - -1.0 744,299 - DvMF_0622 0.23 -0.7
Or see this region's nucleotide sequence