Experiment: MoYLS4 with Vanillin 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0060 and DvMF_0061 are separated by 102 nucleotides DvMF_0061 and DvMF_0062 are separated by 33 nucleotides DvMF_0062 and DvMF_0063 are separated by 158 nucleotides DvMF_0063 and DvMF_0064 overlap by 4 nucleotides
DvMF_0060: DvMF_0060 - UTP-glucose-1-phosphate uridylyltransferase (RefSeq), at 78,141 to 79,016
_0060
DvMF_0061: DvMF_0061 - primosomal protein N' (RefSeq), at 79,119 to 81,539
_0061
DvMF_0062: DvMF_0062 - hypothetical protein (RefSeq), at 81,573 to 81,740
_0062
DvMF_0063: DvMF_0063 - response regulator receiver protein (RefSeq), at 81,899 to 82,291
_0063
DvMF_0064: DvMF_0064 - histidine kinase (RefSeq), at 82,288 to 84,084
_0064
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -1
0
1 at 78.364 kb on - strand, within DvMF_0060 at 78.802 kb on - strand, within DvMF_0060 at 78.918 kb on - strand, within DvMF_0060 at 78.952 kb on + strand at 79.024 kb on - strand at 81.610 kb on + strand, within DvMF_0062 at 81.671 kb on - strand, within DvMF_0062 at 81.896 kb on + strand at 82.023 kb on - strand, within DvMF_0063 at 82.325 kb on + strand at 82.484 kb on + strand, within DvMF_0064 at 82.538 kb on + strand, within DvMF_0064
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with Vanillin 5 mM remove 78,364 - DvMF_0060 0.25 -1.2 78,802 - DvMF_0060 0.75 -0.4 78,918 - DvMF_0060 0.89 -0.5 78,952 + -0.3 79,024 - -1.2 81,610 + DvMF_0062 0.22 -0.2 81,671 - DvMF_0062 0.58 -0.3 81,896 + -0.2 82,023 - DvMF_0063 0.32 +1.3 82,325 + -0.2 82,484 + DvMF_0064 0.11 +0.1 82,538 + DvMF_0064 0.14 -0.4
Or see this region's nucleotide sequence