Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_1529 and Synpcc7942_1530 are separated by 59 nucleotides Synpcc7942_1530 and modA are separated by 90 nucleotides modA and Synpcc7942_1532 overlap by 4 nucleotides Synpcc7942_1532 and sdhB overlap by 23 nucleotides
Synpcc7942_1529: Synpcc7942_1529 - hypothetical protein, at 1,589,204 to 1,590,223
_1529
Synpcc7942_1530: Synpcc7942_1530 - molybdenum-pterin binding domain, at 1,590,283 to 1,590,708
_1530
Synpcc7942_1531: modA - molybdenum ABC transporter, periplasmic molybdate-binding protein, at 1,590,799 to 1,591,614
modA
Synpcc7942_1532: Synpcc7942_1532 - Molybdate ABC transporter, permease protein, at 1,591,611 to 1,592,276
_1532
Synpcc7942_1533: sdhB - succinate dehydrogenase/fumarate reductase iron-sulfur subunit, at 1,592,254 to 1,593,093
sdhB
Position (kb) 1590
1591
1592 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 1590.311 kb on - strand at 1590.322 kb on - strand at 1590.326 kb on + strand, within Synpcc7942_1530 at 1590.333 kb on - strand, within Synpcc7942_1530 at 1590.334 kb on - strand, within Synpcc7942_1530 at 1590.410 kb on + strand, within Synpcc7942_1530 at 1590.441 kb on - strand, within Synpcc7942_1530 at 1590.495 kb on - strand, within Synpcc7942_1530 at 1590.505 kb on - strand, within Synpcc7942_1530 at 1590.508 kb on + strand, within Synpcc7942_1530 at 1590.572 kb on - strand, within Synpcc7942_1530 at 1590.573 kb on - strand, within Synpcc7942_1530 at 1590.672 kb on + strand at 1590.741 kb on - strand at 1590.752 kb on - strand at 1591.027 kb on - strand, within modA at 1591.162 kb on + strand, within modA at 1591.284 kb on + strand, within modA at 1591.373 kb on - strand, within modA at 1591.462 kb on + strand, within modA at 1591.559 kb on - strand at 1591.628 kb on - strand at 1591.628 kb on - strand at 1592.051 kb on + strand, within Synpcc7942_1532 at 1592.230 kb on - strand at 1592.249 kb on + strand at 1592.249 kb on + strand at 1592.271 kb on + strand at 1592.314 kb on - strand at 1592.327 kb on + strand at 1592.327 kb on + strand at 1592.335 kb on - strand at 1592.342 kb on - strand, within sdhB at 1592.390 kb on + strand, within sdhB at 1592.396 kb on - strand, within sdhB at 1592.398 kb on - strand, within sdhB at 1592.400 kb on + strand, within sdhB at 1592.400 kb on + strand, within sdhB at 1592.408 kb on + strand, within sdhB at 1592.408 kb on - strand, within sdhB at 1592.419 kb on + strand, within sdhB at 1592.445 kb on + strand, within sdhB at 1592.451 kb on - strand, within sdhB at 1592.460 kb on - strand, within sdhB at 1592.485 kb on - strand, within sdhB at 1592.489 kb on + strand, within sdhB at 1592.497 kb on - strand, within sdhB at 1592.551 kb on - strand, within sdhB at 1592.560 kb on + strand, within sdhB at 1592.596 kb on + strand, within sdhB at 1592.602 kb on + strand, within sdhB
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 1,590,311 - +0.6 1,590,322 - +0.7 1,590,326 + Synpcc7942_1530 0.10 +2.4 1,590,333 - Synpcc7942_1530 0.12 +2.3 1,590,334 - Synpcc7942_1530 0.12 +1.0 1,590,410 + Synpcc7942_1530 0.30 -2.6 1,590,441 - Synpcc7942_1530 0.37 -2.1 1,590,495 - Synpcc7942_1530 0.50 -1.6 1,590,505 - Synpcc7942_1530 0.52 -0.0 1,590,508 + Synpcc7942_1530 0.53 -0.1 1,590,572 - Synpcc7942_1530 0.68 +1.0 1,590,573 - Synpcc7942_1530 0.68 +0.1 1,590,672 + -1.9 1,590,741 - +0.3 1,590,752 - +4.4 1,591,027 - modA Synpcc7942_1531 0.28 -2.5 1,591,162 + modA Synpcc7942_1531 0.44 -1.1 1,591,284 + modA Synpcc7942_1531 0.59 -0.1 1,591,373 - modA Synpcc7942_1531 0.70 -0.7 1,591,462 + modA Synpcc7942_1531 0.81 -2.7 1,591,559 - -1.5 1,591,628 - -1.1 1,591,628 - -0.6 1,592,051 + Synpcc7942_1532 0.66 -1.1 1,592,230 - -0.7 1,592,249 + +0.5 1,592,249 + +0.4 1,592,271 + +1.7 1,592,314 - -1.7 1,592,327 + -0.4 1,592,327 + +0.7 1,592,335 - +0.4 1,592,342 - sdhB Synpcc7942_1533 0.10 -0.9 1,592,390 + sdhB Synpcc7942_1533 0.16 +0.5 1,592,396 - sdhB Synpcc7942_1533 0.17 -0.1 1,592,398 - sdhB Synpcc7942_1533 0.17 +3.3 1,592,400 + sdhB Synpcc7942_1533 0.17 -0.6 1,592,400 + sdhB Synpcc7942_1533 0.17 +1.5 1,592,408 + sdhB Synpcc7942_1533 0.18 -1.6 1,592,408 - sdhB Synpcc7942_1533 0.18 +0.7 1,592,419 + sdhB Synpcc7942_1533 0.20 +0.3 1,592,445 + sdhB Synpcc7942_1533 0.23 -1.7 1,592,451 - sdhB Synpcc7942_1533 0.23 +1.4 1,592,460 - sdhB Synpcc7942_1533 0.25 -0.4 1,592,485 - sdhB Synpcc7942_1533 0.28 +1.1 1,592,489 + sdhB Synpcc7942_1533 0.28 +0.8 1,592,497 - sdhB Synpcc7942_1533 0.29 -0.1 1,592,551 - sdhB Synpcc7942_1533 0.35 -0.1 1,592,560 + sdhB Synpcc7942_1533 0.36 +0.9 1,592,596 + sdhB Synpcc7942_1533 0.41 -0.4 1,592,602 + sdhB Synpcc7942_1533 0.41 -1.4
Or see this region's nucleotide sequence