Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0604

Experiment: BG11

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntglgC and rpe are separated by 138 nucleotidesrpe and Synpcc7942_0605 are separated by 77 nucleotides Synpcc7942_0603: glgC - glucose-1-phosphate adenylyltransferase, at 591,459 to 592,751 glgC Synpcc7942_0604: rpe - ribulose-phosphate 3-epimerase, at 592,890 to 593,633 rpe Synpcc7942_0605: Synpcc7942_0605 - hypothetical protein, at 593,711 to 594,694 _0605 Position (kb) 592 593 594Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 592.010 kb on - strand, within glgCat 592.383 kb on - strand, within glgCat 592.570 kb on + strand, within glgCat 592.769 kb on - strandat 592.769 kb on - strandat 592.807 kb on + strandat 592.837 kb on + strandat 592.837 kb on + strandat 592.837 kb on + strandat 592.845 kb on - strandat 592.850 kb on - strandat 592.852 kb on + strandat 592.861 kb on - strandat 592.863 kb on + strandat 592.871 kb on - strandat 592.873 kb on + strandat 592.873 kb on + strandat 592.880 kb on + strandat 592.887 kb on - strandat 592.888 kb on - strandat 592.896 kb on - strandat 592.908 kb on - strandat 592.947 kb on - strandat 592.947 kb on - strandat 593.636 kb on - strandat 593.636 kb on - strandat 593.646 kb on + strandat 593.654 kb on - strandat 593.661 kb on - strandat 593.701 kb on + strandat 593.703 kb on - strandat 593.834 kb on - strand, within Synpcc7942_0605at 593.840 kb on + strand, within Synpcc7942_0605at 593.840 kb on + strand, within Synpcc7942_0605at 593.872 kb on + strand, within Synpcc7942_0605at 593.880 kb on - strand, within Synpcc7942_0605at 593.880 kb on - strand, within Synpcc7942_0605at 593.880 kb on - strand, within Synpcc7942_0605at 593.933 kb on - strand, within Synpcc7942_0605at 593.942 kb on + strand, within Synpcc7942_0605at 593.958 kb on + strand, within Synpcc7942_0605at 593.966 kb on - strand, within Synpcc7942_0605at 594.023 kb on - strand, within Synpcc7942_0605at 594.087 kb on - strand, within Synpcc7942_0605at 594.088 kb on + strand, within Synpcc7942_0605at 594.088 kb on + strand, within Synpcc7942_0605at 594.096 kb on - strand, within Synpcc7942_0605at 594.096 kb on - strandat 594.096 kb on - strand, within Synpcc7942_0605at 594.096 kb on - strand, within Synpcc7942_0605at 594.096 kb on - strand, within Synpcc7942_0605at 594.096 kb on - strand, within Synpcc7942_0605at 594.118 kb on - strand, within Synpcc7942_0605at 594.123 kb on - strand, within Synpcc7942_0605at 594.137 kb on + strand, within Synpcc7942_0605at 594.137 kb on - strand, within Synpcc7942_0605at 594.145 kb on + strand, within Synpcc7942_0605at 594.145 kb on + strand, within Synpcc7942_0605at 594.145 kb on + strand, within Synpcc7942_0605at 594.153 kb on - strand, within Synpcc7942_0605at 594.153 kb on - strand, within Synpcc7942_0605at 594.153 kb on - strand, within Synpcc7942_0605at 594.153 kb on - strand, within Synpcc7942_0605at 594.155 kb on + strand, within Synpcc7942_0605at 594.169 kb on + strand, within Synpcc7942_0605at 594.177 kb on - strand, within Synpcc7942_0605at 594.177 kb on - strand, within Synpcc7942_0605at 594.177 kb on - strand, within Synpcc7942_0605at 594.177 kb on - strand, within Synpcc7942_0605at 594.209 kb on + strand, within Synpcc7942_0605at 594.246 kb on + strand, within Synpcc7942_0605at 594.268 kb on - strand, within Synpcc7942_0605at 594.286 kb on + strand, within Synpcc7942_0605at 594.309 kb on + strand, within Synpcc7942_0605at 594.319 kb on + strand, within Synpcc7942_0605at 594.322 kb on + strand, within Synpcc7942_0605at 594.322 kb on + strand, within Synpcc7942_0605at 594.322 kb on + strand, within Synpcc7942_0605at 594.322 kb on + strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.330 kb on - strand, within Synpcc7942_0605at 594.347 kb on + strand, within Synpcc7942_0605at 594.387 kb on + strand, within Synpcc7942_0605at 594.418 kb on + strand, within Synpcc7942_0605at 594.432 kb on + strand, within Synpcc7942_0605at 594.440 kb on - strand, within Synpcc7942_0605at 594.448 kb on - strand, within Synpcc7942_0605at 594.527 kb on - strand, within Synpcc7942_0605at 594.529 kb on + strand, within Synpcc7942_0605at 594.532 kb on - strand, within Synpcc7942_0605at 594.546 kb on - strand, within Synpcc7942_0605at 594.553 kb on + strand, within Synpcc7942_0605at 594.572 kb on - strand, within Synpcc7942_0605at 594.593 kb on + strand, within Synpcc7942_0605at 594.601 kb on - strandat 594.603 kb on + strandat 594.625 kb on + strandat 594.625 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BG11
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592,010 - glgC Synpcc7942_0603 0.43 -3.1
592,383 - glgC Synpcc7942_0603 0.71 -3.3
592,570 + glgC Synpcc7942_0603 0.86 -2.5
592,769 - -1.8
592,769 - -1.7
592,807 + -1.4
592,837 + -2.9
592,837 + +0.9
592,837 + -2.5
592,845 - +3.2
592,850 - +1.5
592,852 + +0.4
592,861 - +1.2
592,863 + -0.8
592,871 - -0.8
592,873 + +1.7
592,873 + +1.9
592,880 + -0.3
592,887 - -0.3
592,888 - -3.1
592,896 - +0.4
592,908 - +0.1
592,947 - -0.5
592,947 - -0.1
593,636 - +0.4
593,636 - -1.7
593,646 + -0.5
593,654 - -2.1
593,661 - +1.2
593,701 + -0.1
593,703 - -2.5
593,834 - Synpcc7942_0605 0.12 +1.2
593,840 + Synpcc7942_0605 0.13 +0.7
593,840 + Synpcc7942_0605 0.13 -3.7
593,872 + Synpcc7942_0605 0.16 -3.6
593,880 - Synpcc7942_0605 0.17 +0.9
593,880 - Synpcc7942_0605 0.17 -0.4
593,880 - Synpcc7942_0605 0.17 +1.2
593,933 - Synpcc7942_0605 0.23 +1.2
593,942 + Synpcc7942_0605 0.23 +0.4
593,958 + Synpcc7942_0605 0.25 +1.5
593,966 - Synpcc7942_0605 0.26 +0.8
594,023 - Synpcc7942_0605 0.32 -2.1
594,087 - Synpcc7942_0605 0.38 -4.5
594,088 + Synpcc7942_0605 0.38 +0.5
594,088 + Synpcc7942_0605 0.38 -0.7
594,096 - Synpcc7942_0605 0.39 +2.7
594,096 - -1.1
594,096 - Synpcc7942_0605 0.39 +0.5
594,096 - Synpcc7942_0605 0.39 -0.1
594,096 - Synpcc7942_0605 0.39 -0.5
594,096 - Synpcc7942_0605 0.39 +0.3
594,118 - Synpcc7942_0605 0.41 +0.1
594,123 - Synpcc7942_0605 0.42 +1.5
594,137 + Synpcc7942_0605 0.43 -0.1
594,137 - Synpcc7942_0605 0.43 +2.4
594,145 + Synpcc7942_0605 0.44 -1.0
594,145 + Synpcc7942_0605 0.44 +1.9
594,145 + Synpcc7942_0605 0.44 -2.1
594,153 - Synpcc7942_0605 0.45 +0.5
594,153 - Synpcc7942_0605 0.45 +0.1
594,153 - Synpcc7942_0605 0.45 -0.4
594,153 - Synpcc7942_0605 0.45 +0.2
594,155 + Synpcc7942_0605 0.45 -1.6
594,169 + Synpcc7942_0605 0.47 -1.2
594,177 - Synpcc7942_0605 0.47 +1.5
594,177 - Synpcc7942_0605 0.47 +0.9
594,177 - Synpcc7942_0605 0.47 +0.9
594,177 - Synpcc7942_0605 0.47 -1.5
594,209 + Synpcc7942_0605 0.51 -0.1
594,246 + Synpcc7942_0605 0.54 -0.0
594,268 - Synpcc7942_0605 0.57 -0.1
594,286 + Synpcc7942_0605 0.58 -2.1
594,309 + Synpcc7942_0605 0.61 -1.5
594,319 + Synpcc7942_0605 0.62 -0.1
594,322 + Synpcc7942_0605 0.62 -0.1
594,322 + Synpcc7942_0605 0.62 -0.4
594,322 + Synpcc7942_0605 0.62 +0.1
594,322 + Synpcc7942_0605 0.62 -0.0
594,330 - Synpcc7942_0605 0.63 -2.9
594,330 - Synpcc7942_0605 0.63 +2.3
594,330 - Synpcc7942_0605 0.63 +0.7
594,330 - Synpcc7942_0605 0.63 -0.1
594,330 - Synpcc7942_0605 0.63 -0.2
594,330 - Synpcc7942_0605 0.63 -1.4
594,330 - Synpcc7942_0605 0.63 -0.5
594,330 - Synpcc7942_0605 0.63 +0.0
594,347 + Synpcc7942_0605 0.65 -1.0
594,387 + Synpcc7942_0605 0.69 +0.3
594,418 + Synpcc7942_0605 0.72 +0.9
594,432 + Synpcc7942_0605 0.73 +0.7
594,440 - Synpcc7942_0605 0.74 +0.3
594,448 - Synpcc7942_0605 0.75 +0.4
594,527 - Synpcc7942_0605 0.83 -0.4
594,529 + Synpcc7942_0605 0.83 -0.1
594,532 - Synpcc7942_0605 0.83 -1.1
594,546 - Synpcc7942_0605 0.85 +1.4
594,553 + Synpcc7942_0605 0.86 +0.5
594,572 - Synpcc7942_0605 0.88 -0.6
594,593 + Synpcc7942_0605 0.90 +2.5
594,601 - +1.5
594,603 + -0.1
594,625 + -0.1
594,625 + -0.4

Or see this region's nucleotide sequence