Experiment: BG11
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0451 and Synpcc7942_0452 are separated by 57 nucleotides Synpcc7942_0452 and Synpcc7942_0453 are separated by 185 nucleotides Synpcc7942_0453 and cobS overlap by 20 nucleotides cobS and tgt are separated by 28 nucleotides
Synpcc7942_0451: Synpcc7942_0451 - esterase, at 440,670 to 441,299
_0451
Synpcc7942_0452: Synpcc7942_0452 - hypothetical protein, at 441,357 to 441,836
_0452
Synpcc7942_0453: Synpcc7942_0453 - GAF sensor signal transduction histidine kinase, at 442,022 to 443,236
_0453
Synpcc7942_0454: cobS - cobalamin synthase, at 443,217 to 443,972
cobS
Synpcc7942_0455: tgt - queuine tRNA-ribosyltransferase, at 444,001 to 445,155
tgt
Position (kb) 442
443
444 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 441.039 kb on - strand, within Synpcc7942_0451 at 441.049 kb on - strand, within Synpcc7942_0451 at 441.068 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.074 kb on + strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.082 kb on - strand, within Synpcc7942_0451 at 441.106 kb on + strand, within Synpcc7942_0451 at 441.144 kb on + strand, within Synpcc7942_0451 at 441.194 kb on + strand, within Synpcc7942_0451 at 441.196 kb on + strand, within Synpcc7942_0451 at 441.202 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.204 kb on - strand, within Synpcc7942_0451 at 441.209 kb on - strand, within Synpcc7942_0451 at 441.235 kb on + strand, within Synpcc7942_0451 at 441.272 kb on + strand at 441.280 kb on - strand at 441.440 kb on + strand, within Synpcc7942_0452 at 441.505 kb on + strand, within Synpcc7942_0452 at 441.573 kb on - strand, within Synpcc7942_0452 at 441.765 kb on + strand, within Synpcc7942_0452 at 441.860 kb on + strand at 441.915 kb on + strand at 441.924 kb on + strand at 441.924 kb on + strand at 441.936 kb on + strand at 441.937 kb on + strand at 441.967 kb on - strand at 441.991 kb on - strand at 441.992 kb on + strand at 442.004 kb on + strand at 442.012 kb on - strand at 443.209 kb on + strand at 443.215 kb on + strand at 443.215 kb on + strand at 443.953 kb on + strand at 443.953 kb on + strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.961 kb on - strand at 443.981 kb on + strand at 444.004 kb on + strand at 444.017 kb on - strand at 444.042 kb on + strand at 444.042 kb on - strand at 444.070 kb on + strand at 444.073 kb on - strand at 444.073 kb on - strand at 444.096 kb on - strand at 444.107 kb on + strand at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.207 kb on + strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.215 kb on - strand, within tgt at 444.221 kb on - strand, within tgt
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 remove 441,039 - Synpcc7942_0451 0.59 +3.3 441,049 - Synpcc7942_0451 0.60 -2.4 441,068 + Synpcc7942_0451 0.63 +2.2 441,074 + Synpcc7942_0451 0.64 +0.9 441,074 + Synpcc7942_0451 0.64 +1.4 441,082 - Synpcc7942_0451 0.65 +1.4 441,082 - Synpcc7942_0451 0.65 +1.8 441,106 + Synpcc7942_0451 0.69 +2.5 441,144 + Synpcc7942_0451 0.75 -1.3 441,194 + Synpcc7942_0451 0.83 +1.9 441,196 + Synpcc7942_0451 0.83 -0.1 441,202 - Synpcc7942_0451 0.84 +0.2 441,204 - Synpcc7942_0451 0.85 -0.1 441,204 - Synpcc7942_0451 0.85 +0.9 441,204 - Synpcc7942_0451 0.85 +0.9 441,209 - Synpcc7942_0451 0.86 +0.7 441,235 + Synpcc7942_0451 0.90 -1.7 441,272 + +0.7 441,280 - +0.5 441,440 + Synpcc7942_0452 0.17 -3.1 441,505 + Synpcc7942_0452 0.31 +0.1 441,573 - Synpcc7942_0452 0.45 -0.9 441,765 + Synpcc7942_0452 0.85 -1.7 441,860 + -0.2 441,915 + +1.5 441,924 + -0.1 441,924 + +0.3 441,936 + +2.4 441,937 + +1.9 441,967 - +2.1 441,991 - +0.8 441,992 + -1.7 442,004 + -1.7 442,012 - -1.1 443,209 + -0.1 443,215 + +1.2 443,215 + -2.7 443,953 + -1.3 443,953 + +0.5 443,961 - -0.7 443,961 - -1.7 443,961 - +1.1 443,961 - +1.1 443,961 - -0.7 443,961 - -1.7 443,961 - +2.7 443,961 - -1.5 443,961 - +1.5 443,981 + -0.2 444,004 + -0.1 444,017 - -0.1 444,042 + +0.0 444,042 - +0.3 444,070 + -3.5 444,073 - -4.1 444,073 - -2.7 444,096 - -3.9 444,107 + -2.9 444,207 + tgt Synpcc7942_0455 0.18 -4.9 444,207 + tgt Synpcc7942_0455 0.18 -3.2 444,207 + tgt Synpcc7942_0455 0.18 -3.8 444,207 + tgt Synpcc7942_0455 0.18 -2.3 444,215 - tgt Synpcc7942_0455 0.19 -3.8 444,215 - tgt Synpcc7942_0455 0.19 -6.0 444,215 - tgt Synpcc7942_0455 0.19 -3.2 444,221 - tgt Synpcc7942_0455 0.19 -6.3
Or see this region's nucleotide sequence