Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04342 and SMc04345 are separated by 2 nucleotides SMc04345 and SMc04347 are separated by 19 nucleotides
SMc04342: SMc04342 - methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase, at 2,147,155 to 2,148,117
SMc04342
SMc04345: SMc04345 - hypothetical protein, at 2,148,120 to 2,148,458
SMc04345
SMc04347: SMc04347 - hypothetical protein, at 2,148,478 to 2,150,529
SMc04347
Position (kb)
2148
2149 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2147.120 kb on - strand at 2147.120 kb on - strand at 2147.120 kb on - strand at 2147.120 kb on - strand at 2147.123 kb on + strand at 2147.123 kb on + strand at 2147.124 kb on - strand at 2147.124 kb on - strand at 2147.152 kb on + strand at 2147.153 kb on - strand at 2147.153 kb on - strand at 2147.153 kb on - strand at 2147.153 kb on - strand at 2147.153 kb on - strand at 2147.153 kb on - strand at 2147.153 kb on - strand at 2147.154 kb on + strand at 2147.154 kb on + strand at 2147.155 kb on - strand at 2147.253 kb on + strand, within SMc04342 at 2147.572 kb on + strand, within SMc04342 at 2147.572 kb on + strand, within SMc04342 at 2147.573 kb on - strand, within SMc04342 at 2147.573 kb on - strand, within SMc04342 at 2147.573 kb on - strand, within SMc04342 at 2147.998 kb on + strand, within SMc04342 at 2147.999 kb on - strand, within SMc04342 at 2148.219 kb on - strand, within SMc04345 at 2148.241 kb on - strand, within SMc04345 at 2148.241 kb on - strand, within SMc04345 at 2148.601 kb on + strand at 2148.602 kb on - strand at 2148.705 kb on + strand, within SMc04347 at 2148.705 kb on + strand, within SMc04347 at 2148.706 kb on - strand, within SMc04347 at 2148.904 kb on + strand, within SMc04347 at 2148.904 kb on + strand, within SMc04347 at 2148.904 kb on + strand, within SMc04347 at 2148.933 kb on + strand, within SMc04347 at 2148.933 kb on + strand, within SMc04347 at 2149.037 kb on + strand, within SMc04347 at 2149.037 kb on + strand, within SMc04347 at 2149.141 kb on + strand, within SMc04347 at 2149.142 kb on - strand, within SMc04347 at 2149.279 kb on + strand, within SMc04347 at 2149.279 kb on + strand, within SMc04347 at 2149.280 kb on - strand, within SMc04347 at 2149.280 kb on - strand, within SMc04347
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 2,147,120 - +1.1 2,147,120 - +0.5 2,147,120 - +2.1 2,147,120 - +1.3 2,147,123 + +0.1 2,147,123 + -0.5 2,147,124 - -1.2 2,147,124 - -3.1 2,147,152 + -3.1 2,147,153 - -1.1 2,147,153 - +1.0 2,147,153 - +3.6 2,147,153 - +1.5 2,147,153 - -0.6 2,147,153 - -1.0 2,147,153 - +0.4 2,147,154 + -0.2 2,147,154 + +0.1 2,147,155 - +0.4 2,147,253 + SMc04342 0.10 -0.4 2,147,572 + SMc04342 0.43 +0.8 2,147,572 + SMc04342 0.43 -2.1 2,147,573 - SMc04342 0.43 -0.2 2,147,573 - SMc04342 0.43 -0.1 2,147,573 - SMc04342 0.43 +1.3 2,147,998 + SMc04342 0.88 -0.4 2,147,999 - SMc04342 0.88 +0.4 2,148,219 - SMc04345 0.29 +0.9 2,148,241 - SMc04345 0.36 +0.9 2,148,241 - SMc04345 0.36 +2.2 2,148,601 + -0.1 2,148,602 - +1.1 2,148,705 + SMc04347 0.11 -0.2 2,148,705 + SMc04347 0.11 +1.2 2,148,706 - SMc04347 0.11 -2.6 2,148,904 + SMc04347 0.21 -0.0 2,148,904 + SMc04347 0.21 +0.4 2,148,904 + SMc04347 0.21 -0.5 2,148,933 + SMc04347 0.22 -0.4 2,148,933 + SMc04347 0.22 +2.0 2,149,037 + SMc04347 0.27 +0.8 2,149,037 + SMc04347 0.27 +1.2 2,149,141 + SMc04347 0.32 +0.5 2,149,142 - SMc04347 0.32 -0.5 2,149,279 + SMc04347 0.39 -0.8 2,149,279 + SMc04347 0.39 -1.3 2,149,280 - SMc04347 0.39 -0.7 2,149,280 - SMc04347 0.39 +0.3
Or see this region's nucleotide sequence