Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04274 and SMc04276 are separated by 150 nucleotides SMc04276 and SMc04280 are separated by 787 nucleotides
SMc04274: SMc04274 - hypothetical protein, at 2,202,294 to 2,203,400
SMc04274
SMc04276: SMc04276 - signal peptide protein, at 2,203,551 to 2,203,994
SMc04276
SMc04280: SMc04280 - signal peptide protein, at 2,204,782 to 2,206,116
SMc04280
Position (kb)
2203
2204 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2202.634 kb on + strand, within SMc04274 at 2202.720 kb on - strand, within SMc04274 at 2202.720 kb on - strand, within SMc04274 at 2202.749 kb on + strand, within SMc04274 at 2202.777 kb on - strand, within SMc04274 at 2202.850 kb on + strand, within SMc04274 at 2202.850 kb on + strand, within SMc04274 at 2202.851 kb on - strand, within SMc04274 at 2202.851 kb on - strand, within SMc04274 at 2202.851 kb on - strand, within SMc04274 at 2202.932 kb on + strand, within SMc04274 at 2202.932 kb on + strand, within SMc04274 at 2202.932 kb on + strand, within SMc04274 at 2202.933 kb on - strand, within SMc04274 at 2202.933 kb on - strand, within SMc04274 at 2202.933 kb on - strand, within SMc04274 at 2202.933 kb on - strand, within SMc04274 at 2202.970 kb on + strand, within SMc04274 at 2202.970 kb on + strand, within SMc04274 at 2203.056 kb on + strand, within SMc04274 at 2203.056 kb on + strand, within SMc04274 at 2203.056 kb on + strand, within SMc04274 at 2203.056 kb on + strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.057 kb on - strand, within SMc04274 at 2203.088 kb on - strand, within SMc04274 at 2203.126 kb on + strand, within SMc04274 at 2203.126 kb on + strand, within SMc04274 at 2203.126 kb on + strand, within SMc04274 at 2203.133 kb on - strand, within SMc04274 at 2203.274 kb on - strand, within SMc04274 at 2203.274 kb on - strand, within SMc04274 at 2203.274 kb on - strand, within SMc04274 at 2203.378 kb on - strand at 2203.457 kb on + strand at 2203.552 kb on + strand at 2203.672 kb on + strand, within SMc04276 at 2203.672 kb on + strand, within SMc04276 at 2203.672 kb on + strand, within SMc04276 at 2203.672 kb on + strand, within SMc04276 at 2203.673 kb on - strand, within SMc04276 at 2203.673 kb on - strand, within SMc04276 at 2203.673 kb on - strand, within SMc04276 at 2203.673 kb on - strand, within SMc04276 at 2203.673 kb on - strand, within SMc04276 at 2203.718 kb on - strand, within SMc04276 at 2203.768 kb on + strand, within SMc04276 at 2203.769 kb on - strand, within SMc04276 at 2203.769 kb on - strand, within SMc04276 at 2203.769 kb on - strand, within SMc04276 at 2203.904 kb on - strand, within SMc04276 at 2203.904 kb on - strand, within SMc04276 at 2203.952 kb on + strand at 2203.952 kb on + strand at 2203.953 kb on - strand at 2204.046 kb on + strand at 2204.187 kb on + strand at 2204.187 kb on + strand at 2204.187 kb on + strand at 2204.264 kb on - strand at 2204.264 kb on - strand at 2204.367 kb on + strand at 2204.468 kb on + strand at 2204.601 kb on + strand at 2204.810 kb on + strand at 2204.824 kb on - strand at 2204.824 kb on - strand at 2204.859 kb on + strand at 2204.859 kb on + strand at 2204.859 kb on + strand at 2204.934 kb on - strand, within SMc04280 at 2204.934 kb on - strand, within SMc04280 at 2204.960 kb on + strand, within SMc04280 at 2204.960 kb on + strand, within SMc04280 at 2204.961 kb on - strand, within SMc04280
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 2,202,634 + SMc04274 0.31 -0.6 2,202,720 - SMc04274 0.38 +0.1 2,202,720 - SMc04274 0.38 +1.4 2,202,749 + SMc04274 0.41 +0.3 2,202,777 - SMc04274 0.44 +0.6 2,202,850 + SMc04274 0.50 +0.7 2,202,850 + SMc04274 0.50 +0.8 2,202,851 - SMc04274 0.50 -0.0 2,202,851 - SMc04274 0.50 +0.3 2,202,851 - SMc04274 0.50 +1.2 2,202,932 + SMc04274 0.58 -2.1 2,202,932 + SMc04274 0.58 +0.5 2,202,932 + SMc04274 0.58 -0.0 2,202,933 - SMc04274 0.58 -0.6 2,202,933 - SMc04274 0.58 -0.1 2,202,933 - SMc04274 0.58 +0.6 2,202,933 - SMc04274 0.58 -2.4 2,202,970 + SMc04274 0.61 +2.4 2,202,970 + SMc04274 0.61 +2.9 2,203,056 + SMc04274 0.69 -1.0 2,203,056 + SMc04274 0.69 -2.4 2,203,056 + SMc04274 0.69 +0.8 2,203,056 + SMc04274 0.69 -1.9 2,203,057 - SMc04274 0.69 -1.4 2,203,057 - SMc04274 0.69 +1.1 2,203,057 - SMc04274 0.69 +0.7 2,203,057 - SMc04274 0.69 +0.3 2,203,057 - SMc04274 0.69 +1.1 2,203,057 - SMc04274 0.69 -2.2 2,203,057 - SMc04274 0.69 +2.6 2,203,057 - SMc04274 0.69 +0.8 2,203,088 - SMc04274 0.72 +1.0 2,203,126 + SMc04274 0.75 +1.8 2,203,126 + SMc04274 0.75 -1.3 2,203,126 + SMc04274 0.75 +0.7 2,203,133 - SMc04274 0.76 -1.0 2,203,274 - SMc04274 0.89 +1.3 2,203,274 - SMc04274 0.89 +1.5 2,203,274 - SMc04274 0.89 +1.8 2,203,378 - -1.2 2,203,457 + +0.5 2,203,552 + +0.8 2,203,672 + SMc04276 0.27 -1.2 2,203,672 + SMc04276 0.27 +0.5 2,203,672 + SMc04276 0.27 +0.8 2,203,672 + SMc04276 0.27 +1.3 2,203,673 - SMc04276 0.27 +1.8 2,203,673 - SMc04276 0.27 +1.9 2,203,673 - SMc04276 0.27 +4.5 2,203,673 - SMc04276 0.27 -2.7 2,203,673 - SMc04276 0.27 -0.2 2,203,718 - SMc04276 0.38 +0.4 2,203,768 + SMc04276 0.49 +1.2 2,203,769 - SMc04276 0.49 +0.2 2,203,769 - SMc04276 0.49 +0.4 2,203,769 - SMc04276 0.49 +1.0 2,203,904 - SMc04276 0.80 -0.6 2,203,904 - SMc04276 0.80 -0.6 2,203,952 + -1.5 2,203,952 + -0.3 2,203,953 - -3.1 2,204,046 + +1.2 2,204,187 + -2.0 2,204,187 + +2.0 2,204,187 + +0.1 2,204,264 - -1.8 2,204,264 - +0.8 2,204,367 + +0.4 2,204,468 + -0.1 2,204,601 + -1.9 2,204,810 + +1.3 2,204,824 - -0.2 2,204,824 - +1.1 2,204,859 + +0.2 2,204,859 + -0.5 2,204,859 + -1.2 2,204,934 - SMc04280 0.11 +1.2 2,204,934 - SMc04280 0.11 +0.2 2,204,960 + SMc04280 0.13 +1.2 2,204,960 + SMc04280 0.13 -1.0 2,204,961 - SMc04280 0.13 +1.5
Or see this region's nucleotide sequence