Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03810 and SMc03811 overlap by 4 nucleotides SMc03811 and SMc03812 overlap by 1 nucleotides
SMc03810: SMc03810 - hypothetical protein, at 3,476,946 to 3,477,755
SMc03810
SMc03811: SMc03811 - hypothetical protein, at 3,477,752 to 3,478,582
SMc03811
SMc03812: SMc03812 - oxidoreductase, at 3,478,582 to 3,479,658
SMc03812
Position (kb)
3477
3478
3479 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3476.810 kb on - strand at 3476.959 kb on + strand at 3477.001 kb on + strand at 3477.365 kb on + strand, within SMc03810 at 3477.366 kb on - strand, within SMc03810 at 3477.518 kb on - strand, within SMc03810 at 3477.871 kb on - strand, within SMc03811 at 3477.880 kb on - strand, within SMc03811 at 3478.368 kb on + strand, within SMc03811 at 3478.368 kb on + strand, within SMc03811 at 3478.369 kb on - strand, within SMc03811 at 3478.369 kb on - strand, within SMc03811 at 3478.748 kb on + strand, within SMc03812 at 3478.749 kb on - strand, within SMc03812 at 3478.749 kb on - strand, within SMc03812 at 3478.827 kb on - strand, within SMc03812 at 3478.827 kb on - strand, within SMc03812 at 3478.827 kb on - strand, within SMc03812 at 3478.829 kb on + strand, within SMc03812 at 3478.839 kb on + strand, within SMc03812 at 3478.840 kb on - strand, within SMc03812 at 3478.840 kb on - strand, within SMc03812 at 3478.841 kb on + strand, within SMc03812 at 3478.841 kb on + strand, within SMc03812 at 3478.842 kb on - strand, within SMc03812 at 3478.842 kb on - strand, within SMc03812 at 3478.842 kb on - strand at 3478.842 kb on - strand, within SMc03812 at 3479.030 kb on + strand, within SMc03812 at 3479.031 kb on - strand, within SMc03812 at 3479.031 kb on - strand, within SMc03812 at 3479.072 kb on + strand, within SMc03812 at 3479.072 kb on + strand, within SMc03812 at 3479.072 kb on + strand, within SMc03812 at 3479.073 kb on - strand, within SMc03812 at 3479.073 kb on - strand, within SMc03812 at 3479.075 kb on + strand, within SMc03812 at 3479.165 kb on + strand, within SMc03812 at 3479.186 kb on + strand, within SMc03812 at 3479.481 kb on - strand, within SMc03812 at 3479.545 kb on - strand, within SMc03812 at 3479.545 kb on - strand, within SMc03812
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 3,476,810 - -2.2 3,476,959 + -1.5 3,477,001 + -1.5 3,477,365 + SMc03810 0.52 +1.4 3,477,366 - SMc03810 0.52 -1.1 3,477,518 - SMc03810 0.71 -2.4 3,477,871 - SMc03811 0.14 +1.0 3,477,880 - SMc03811 0.15 -0.3 3,478,368 + SMc03811 0.74 -2.2 3,478,368 + SMc03811 0.74 +0.4 3,478,369 - SMc03811 0.74 +0.8 3,478,369 - SMc03811 0.74 +0.6 3,478,748 + SMc03812 0.15 +0.3 3,478,749 - SMc03812 0.16 -0.0 3,478,749 - SMc03812 0.16 +0.8 3,478,827 - SMc03812 0.23 +0.3 3,478,827 - SMc03812 0.23 +0.8 3,478,827 - SMc03812 0.23 +0.1 3,478,829 + SMc03812 0.23 +0.5 3,478,839 + SMc03812 0.24 +1.2 3,478,840 - SMc03812 0.24 -0.7 3,478,840 - SMc03812 0.24 -0.7 3,478,841 + SMc03812 0.24 -0.1 3,478,841 + SMc03812 0.24 +0.1 3,478,842 - SMc03812 0.24 -0.2 3,478,842 - SMc03812 0.24 -0.6 3,478,842 - +0.8 3,478,842 - SMc03812 0.24 +1.2 3,479,030 + SMc03812 0.42 +0.8 3,479,031 - SMc03812 0.42 -0.2 3,479,031 - SMc03812 0.42 -0.8 3,479,072 + SMc03812 0.45 -0.7 3,479,072 + SMc03812 0.45 -1.9 3,479,072 + SMc03812 0.45 +1.4 3,479,073 - SMc03812 0.46 -2.7 3,479,073 - SMc03812 0.46 +2.7 3,479,075 + SMc03812 0.46 +0.4 3,479,165 + SMc03812 0.54 +0.1 3,479,186 + SMc03812 0.56 -1.3 3,479,481 - SMc03812 0.83 -0.7 3,479,545 - SMc03812 0.89 +1.1 3,479,545 - SMc03812 0.89 -0.2
Or see this region's nucleotide sequence