Strain Fitness in Sinorhizobium meliloti 1021 around SMc03244

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03243 and SMc03244 are separated by 156 nucleotidesSMc03244 and SMc03245 are separated by 124 nucleotides SMc03243: SMc03243 - alkaline phosphatase transmembrane protein, at 3,351,886 to 3,353,448 SMc03243 SMc03244: SMc03244 - hypothetical protein, at 3,353,605 to 3,353,826 SMc03244 SMc03245: SMc03245 - amidase, at 3,353,951 to 3,355,258 SMc03245 Position (kb) 3353 3354Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3352.623 kb on - strand, within SMc03243at 3352.715 kb on + strand, within SMc03243at 3352.770 kb on - strand, within SMc03243at 3352.770 kb on - strand, within SMc03243at 3352.882 kb on - strand, within SMc03243at 3352.952 kb on + strand, within SMc03243at 3352.952 kb on + strand, within SMc03243at 3353.114 kb on + strand, within SMc03243at 3353.114 kb on + strand, within SMc03243at 3353.292 kb on + strandat 3353.311 kb on + strandat 3353.339 kb on + strandat 3353.351 kb on + strandat 3353.351 kb on + strandat 3353.351 kb on + strandat 3353.352 kb on - strandat 3353.606 kb on + strandat 3353.607 kb on - strandat 3353.622 kb on - strandat 3353.632 kb on + strand, within SMc03244at 3353.632 kb on + strand, within SMc03244at 3353.632 kb on + strand, within SMc03244at 3353.633 kb on - strand, within SMc03244at 3353.633 kb on - strand, within SMc03244at 3353.633 kb on - strand, within SMc03244at 3353.648 kb on + strand, within SMc03244at 3353.648 kb on + strand, within SMc03244at 3353.649 kb on - strand, within SMc03244at 3353.684 kb on + strand, within SMc03244at 3353.684 kb on + strand, within SMc03244at 3353.715 kb on - strand, within SMc03244at 3353.715 kb on - strand, within SMc03244at 3353.715 kb on - strand, within SMc03244at 3353.768 kb on + strand, within SMc03244at 3353.768 kb on + strand, within SMc03244at 3353.769 kb on - strand, within SMc03244at 3353.769 kb on - strand, within SMc03244at 3353.769 kb on - strand, within SMc03244at 3353.769 kb on - strand, within SMc03244at 3353.861 kb on + strandat 3353.866 kb on + strandat 3353.867 kb on - strandat 3353.867 kb on - strandat 3354.298 kb on + strand, within SMc03245at 3354.504 kb on + strand, within SMc03245

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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3,352,623 - SMc03243 0.47 +0.8
3,352,715 + SMc03243 0.53 +2.4
3,352,770 - SMc03243 0.57 +0.8
3,352,770 - SMc03243 0.57 -0.9
3,352,882 - SMc03243 0.64 -2.3
3,352,952 + SMc03243 0.68 -0.7
3,352,952 + SMc03243 0.68 -2.8
3,353,114 + SMc03243 0.79 -0.6
3,353,114 + SMc03243 0.79 +0.5
3,353,292 + -0.1
3,353,311 + -3.2
3,353,339 + +0.8
3,353,351 + +0.5
3,353,351 + +0.2
3,353,351 + -3.3
3,353,352 - -0.0
3,353,606 + +0.9
3,353,607 - -0.8
3,353,622 - -2.0
3,353,632 + SMc03244 0.12 +0.2
3,353,632 + SMc03244 0.12 -1.5
3,353,632 + SMc03244 0.12 -1.8
3,353,633 - SMc03244 0.13 -1.6
3,353,633 - SMc03244 0.13 -1.4
3,353,633 - SMc03244 0.13 +0.8
3,353,648 + SMc03244 0.19 -3.0
3,353,648 + SMc03244 0.19 -3.0
3,353,649 - SMc03244 0.20 +0.5
3,353,684 + SMc03244 0.36 -1.8
3,353,684 + SMc03244 0.36 -1.0
3,353,715 - SMc03244 0.50 +1.5
3,353,715 - SMc03244 0.50 -1.9
3,353,715 - SMc03244 0.50 +1.1
3,353,768 + SMc03244 0.73 -0.4
3,353,768 + SMc03244 0.73 +0.3
3,353,769 - SMc03244 0.74 -1.1
3,353,769 - SMc03244 0.74 +0.4
3,353,769 - SMc03244 0.74 +0.8
3,353,769 - SMc03244 0.74 +0.3
3,353,861 + +2.5
3,353,866 + -1.2
3,353,867 - -1.3
3,353,867 - -1.2
3,354,298 + SMc03245 0.27 -0.5
3,354,504 + SMc03245 0.42 +0.2

Or see this region's nucleotide sequence