Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03138 and SMc03137 are separated by 21 nucleotides SMc03137 and SMc03136 overlap by 4 nucleotides SMc03136 and SMc03135 are separated by 148 nucleotides SMc03135 and SMc03134 are separated by 14 nucleotides SMc03134 and SMc03133 overlap by 11 nucleotides
SMc03138: SMc03138 - sugar kinase, at 3,192,589 to 3,193,401
SMc03138
SMc03137: SMc03137 - hypothetical protein, at 3,193,423 to 3,193,884
SMc03137
SMc03136: SMc03136 - hypothetical protein, at 3,193,881 to 3,194,126
SMc03136
SMc03135: SMc03135 - amino-acid transport system ATP-binding ABC transporter protein, at 3,194,275 to 3,195,030
SMc03135
SMc03134: SMc03134 - hypothetical protein, at 3,195,045 to 3,195,926
SMc03134
SMc03133: SMc03133 - amino-acid transport system permease ABC transporter protein, at 3,195,916 to 3,196,887
SMc03133
Position (kb)
3194
3195
3196 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3193.501 kb on + strand, within SMc03137 at 3193.502 kb on - strand, within SMc03137 at 3193.684 kb on + strand, within SMc03137 at 3193.685 kb on - strand, within SMc03137 at 3193.685 kb on - strand, within SMc03137 at 3193.897 kb on + strand at 3193.897 kb on + strand at 3194.047 kb on + strand, within SMc03136 at 3194.133 kb on - strand at 3194.191 kb on + strand at 3194.192 kb on - strand at 3194.200 kb on + strand at 3194.269 kb on + strand at 3194.270 kb on - strand at 3194.270 kb on - strand at 3194.642 kb on + strand, within SMc03135 at 3194.642 kb on + strand, within SMc03135 at 3194.961 kb on - strand at 3194.961 kb on - strand at 3195.046 kb on + strand at 3195.136 kb on + strand, within SMc03134 at 3195.598 kb on + strand, within SMc03134 at 3195.734 kb on - strand, within SMc03134 at 3195.963 kb on + strand at 3195.963 kb on + strand at 3195.964 kb on - strand at 3195.964 kb on - strand at 3195.965 kb on + strand at 3195.965 kb on + strand at 3195.992 kb on + strand at 3195.992 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 3,193,501 + SMc03137 0.17 -0.6 3,193,502 - SMc03137 0.17 +0.3 3,193,684 + SMc03137 0.56 +0.1 3,193,685 - SMc03137 0.57 -0.8 3,193,685 - SMc03137 0.57 -0.0 3,193,897 + -0.8 3,193,897 + +2.4 3,194,047 + SMc03136 0.67 -0.8 3,194,133 - +0.2 3,194,191 + +0.2 3,194,192 - -2.0 3,194,200 + +1.2 3,194,269 + +0.7 3,194,270 - +0.8 3,194,270 - +0.5 3,194,642 + SMc03135 0.49 -0.0 3,194,642 + SMc03135 0.49 -2.4 3,194,961 - -2.8 3,194,961 - -0.8 3,195,046 + -0.9 3,195,136 + SMc03134 0.10 -0.4 3,195,598 + SMc03134 0.63 -1.7 3,195,734 - SMc03134 0.78 -0.5 3,195,963 + +0.4 3,195,963 + -0.0 3,195,964 - -0.5 3,195,964 - -2.7 3,195,965 + -0.3 3,195,965 + -0.5 3,195,992 + +0.5 3,195,992 + -2.4
Or see this region's nucleotide sequence