Strain Fitness in Sinorhizobium meliloti 1021 around SMc03115

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03116 and SMc03115 are separated by 231 nucleotidesSMc03115 and SMc03114 are separated by 39 nucleotides SMc03116: SMc03116 - alcohol dehydrogenase, at 3,220,730 to 3,222,325 SMc03116 SMc03115: SMc03115 - partial transposase for insertion sequence element ISRM5, at 3,222,557 to 3,222,832 SMc03115 SMc03114: SMc03114 - transposase ISRM3, at 3,222,872 to 3,224,074 SMc03114 Position (kb) 3222 3223Strain fitness (log2 ratio) -1 0 1 2 3at 3221.627 kb on + strand, within SMc03116at 3221.627 kb on + strand, within SMc03116at 3221.627 kb on + strand, within SMc03116at 3221.798 kb on + strand, within SMc03116at 3221.798 kb on + strand, within SMc03116at 3221.799 kb on - strand, within SMc03116at 3221.841 kb on + strand, within SMc03116at 3221.904 kb on + strand, within SMc03116at 3221.905 kb on - strand, within SMc03116at 3221.955 kb on - strand, within SMc03116at 3222.075 kb on - strand, within SMc03116at 3222.075 kb on - strand, within SMc03116at 3222.075 kb on - strand, within SMc03116at 3222.178 kb on - strandat 3222.178 kb on - strandat 3222.419 kb on - strandat 3222.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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3,221,627 + SMc03116 0.56 +0.6
3,221,627 + SMc03116 0.56 +2.8
3,221,627 + SMc03116 0.56 +0.1
3,221,798 + SMc03116 0.67 -0.8
3,221,798 + SMc03116 0.67 -0.7
3,221,799 - SMc03116 0.67 +0.6
3,221,841 + SMc03116 0.70 -0.0
3,221,904 + SMc03116 0.74 +0.8
3,221,905 - SMc03116 0.74 -1.3
3,221,955 - SMc03116 0.77 +1.0
3,222,075 - SMc03116 0.84 -1.4
3,222,075 - SMc03116 0.84 -0.5
3,222,075 - SMc03116 0.84 +0.9
3,222,178 - +0.2
3,222,178 - -1.7
3,222,419 - -0.7
3,222,419 - +0.3

Or see this region's nucleotide sequence