Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03023 and SMc03024 are separated by 1 nucleotides SMc03024 and SMc03025 are separated by 45 nucleotides SMc03025 and SMc03026 overlap by 4 nucleotides SMc03026 and SMc03027 are separated by 307 nucleotides
SMc03023: SMc03023 - hypothetical protein, at 721,127 to 721,906
SMc03023
SMc03024: SMc03024 - flagellar basal body rod protein FlgF, at 721,908 to 722,633
SMc03024
SMc03025: SMc03025 - flagellum-specific ATP synthase, at 722,679 to 724,082
SMc03025
SMc03026: SMc03026 - hypothetical protein, at 724,079 to 724,630
SMc03026
SMc03027: SMc03027 - flagellar basal body rod protein FlgB, at 724,938 to 725,318
SMc03027
Position (kb) 722
723
724
725 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 721.706 kb on + strand, within SMc03023 at 721.707 kb on - strand, within SMc03023 at 721.923 kb on + strand at 721.923 kb on + strand at 721.924 kb on - strand at 721.982 kb on + strand, within SMc03024 at 722.070 kb on + strand, within SMc03024 at 722.071 kb on - strand, within SMc03024 at 722.071 kb on - strand, within SMc03024 at 722.071 kb on - strand, within SMc03024 at 722.243 kb on - strand, within SMc03024 at 722.377 kb on - strand, within SMc03024 at 722.377 kb on - strand, within SMc03024 at 722.377 kb on - strand, within SMc03024 at 722.410 kb on - strand, within SMc03024 at 722.515 kb on + strand, within SMc03024 at 722.516 kb on - strand, within SMc03024 at 722.516 kb on - strand, within SMc03024 at 722.573 kb on + strand at 722.573 kb on + strand at 722.574 kb on - strand at 722.574 kb on - strand at 722.751 kb on + strand at 722.814 kb on + strand at 722.814 kb on + strand at 722.815 kb on - strand at 722.815 kb on - strand at 722.815 kb on - strand at 722.815 kb on - strand at 723.169 kb on + strand, within SMc03025 at 723.767 kb on - strand, within SMc03025 at 723.934 kb on + strand, within SMc03025 at 723.935 kb on - strand, within SMc03025 at 723.955 kb on - strand at 724.158 kb on + strand, within SMc03026 at 724.158 kb on + strand, within SMc03026 at 724.159 kb on - strand, within SMc03026 at 724.159 kb on - strand at 724.211 kb on + strand, within SMc03026 at 724.212 kb on - strand, within SMc03026 at 724.217 kb on + strand, within SMc03026 at 724.218 kb on - strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.514 kb on + strand, within SMc03026 at 724.515 kb on - strand, within SMc03026 at 724.515 kb on - strand, within SMc03026 at 724.515 kb on - strand, within SMc03026 at 724.515 kb on - strand, within SMc03026 at 724.515 kb on - strand, within SMc03026 at 724.515 kb on - strand, within SMc03026 at 724.516 kb on + strand, within SMc03026 at 724.517 kb on - strand, within SMc03026 at 724.517 kb on - strand, within SMc03026 at 724.526 kb on - strand, within SMc03026 at 724.828 kb on - strand at 724.863 kb on + strand at 724.863 kb on + strand at 724.864 kb on - strand at 724.864 kb on - strand at 724.909 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 721,706 + SMc03023 0.74 -2.8 721,707 - SMc03023 0.74 -1.8 721,923 + -0.1 721,923 + -0.8 721,924 - +0.0 721,982 + SMc03024 0.10 -0.9 722,070 + SMc03024 0.22 -1.3 722,071 - SMc03024 0.22 -1.1 722,071 - SMc03024 0.22 -0.6 722,071 - SMc03024 0.22 -1.4 722,243 - SMc03024 0.46 -1.2 722,377 - SMc03024 0.65 -3.5 722,377 - SMc03024 0.65 -0.8 722,377 - SMc03024 0.65 -4.2 722,410 - SMc03024 0.69 +1.4 722,515 + SMc03024 0.84 +2.3 722,516 - SMc03024 0.84 +2.0 722,516 - SMc03024 0.84 +1.3 722,573 + +0.3 722,573 + +1.4 722,574 - +0.6 722,574 - -1.8 722,751 + +2.6 722,814 + -0.5 722,814 + +0.8 722,815 - -0.0 722,815 - -0.7 722,815 - +0.6 722,815 - +1.4 723,169 + SMc03025 0.35 +0.2 723,767 - SMc03025 0.77 -0.8 723,934 + SMc03025 0.89 +1.0 723,935 - SMc03025 0.89 +1.1 723,955 - -4.0 724,158 + SMc03026 0.14 +3.0 724,158 + SMc03026 0.14 -1.1 724,159 - SMc03026 0.14 -0.1 724,159 - +0.8 724,211 + SMc03026 0.24 -3.3 724,212 - SMc03026 0.24 -2.6 724,217 + SMc03026 0.25 +1.2 724,218 - SMc03026 0.25 +1.1 724,514 + SMc03026 0.79 +0.6 724,514 + SMc03026 0.79 +1.6 724,514 + SMc03026 0.79 -0.4 724,514 + SMc03026 0.79 -1.4 724,514 + SMc03026 0.79 -1.6 724,514 + SMc03026 0.79 -0.5 724,514 + SMc03026 0.79 -1.1 724,514 + SMc03026 0.79 +0.5 724,514 + SMc03026 0.79 -4.1 724,515 - SMc03026 0.79 +1.1 724,515 - SMc03026 0.79 -1.2 724,515 - SMc03026 0.79 -0.4 724,515 - SMc03026 0.79 -0.4 724,515 - SMc03026 0.79 +3.0 724,515 - SMc03026 0.79 +1.3 724,516 + SMc03026 0.79 +0.3 724,517 - SMc03026 0.79 -0.2 724,517 - SMc03026 0.79 +0.8 724,526 - SMc03026 0.81 -0.8 724,828 - +1.8 724,863 + +1.2 724,863 + -0.9 724,864 - +0.4 724,864 - -2.8 724,909 - -0.2
Or see this region's nucleotide sequence