Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02714 and SMc02715 are separated by 122 nucleotides SMc02715 and SMc02716 overlap by 4 nucleotides SMc02716 and SMc02717 are separated by 137 nucleotides
SMc02714: SMc02714 - hypothetical protein, at 2,563,208 to 2,564,035
SMc02714
SMc02715: SMc02715 - hypothetical protein, at 2,564,158 to 2,564,586
SMc02715
SMc02716: SMc02716 - hypothetical protein, at 2,564,583 to 2,564,834
SMc02716
SMc02717: SMc02717 - 2-isopropylmalate synthase, at 2,564,972 to 2,566,681
SMc02717
Position (kb)
2564
2565 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 2564.086 kb on + strand at 2564.086 kb on + strand at 2564.087 kb on - strand at 2564.087 kb on - strand at 2564.106 kb on + strand at 2564.107 kb on - strand at 2564.159 kb on + strand at 2564.195 kb on + strand at 2564.196 kb on - strand at 2564.196 kb on - strand at 2564.196 kb on - strand at 2564.612 kb on + strand, within SMc02716 at 2564.613 kb on - strand, within SMc02716 at 2564.613 kb on - strand, within SMc02716 at 2564.650 kb on - strand, within SMc02716 at 2564.772 kb on + strand, within SMc02716 at 2564.825 kb on - strand at 2564.860 kb on + strand at 2564.860 kb on + strand at 2564.861 kb on - strand at 2564.861 kb on - strand at 2564.861 kb on - strand at 2564.863 kb on - strand at 2564.888 kb on - strand at 2565.145 kb on - strand, within SMc02717 at 2565.175 kb on - strand, within SMc02717 at 2565.348 kb on + strand, within SMc02717 at 2565.349 kb on - strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.463 kb on + strand, within SMc02717 at 2565.464 kb on - strand, within SMc02717 at 2565.466 kb on + strand, within SMc02717 at 2565.468 kb on + strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.469 kb on - strand, within SMc02717 at 2565.484 kb on + strand, within SMc02717 at 2565.486 kb on + strand, within SMc02717 at 2565.486 kb on + strand, within SMc02717 at 2565.487 kb on - strand, within SMc02717 at 2565.537 kb on + strand, within SMc02717 at 2565.537 kb on + strand, within SMc02717 at 2565.573 kb on + strand, within SMc02717 at 2565.574 kb on - strand, within SMc02717 at 2565.574 kb on - strand, within SMc02717 at 2565.574 kb on - strand, within SMc02717 at 2565.578 kb on + strand, within SMc02717 at 2565.663 kb on + strand, within SMc02717 at 2565.664 kb on - strand, within SMc02717 at 2565.678 kb on - strand, within SMc02717 at 2565.681 kb on + strand, within SMc02717 at 2565.681 kb on + strand, within SMc02717 at 2565.681 kb on + strand, within SMc02717 at 2565.682 kb on - strand, within SMc02717 at 2565.682 kb on - strand, within SMc02717 at 2565.717 kb on + strand, within SMc02717 at 2565.724 kb on - strand, within SMc02717
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 2,564,086 + -0.3 2,564,086 + -0.8 2,564,087 - -1.9 2,564,087 - +1.8 2,564,106 + +1.9 2,564,107 - +0.2 2,564,159 + -1.2 2,564,195 + -2.0 2,564,196 - +1.3 2,564,196 - +0.0 2,564,196 - -1.6 2,564,612 + SMc02716 0.12 +3.4 2,564,613 - SMc02716 0.12 -0.8 2,564,613 - SMc02716 0.12 +0.6 2,564,650 - SMc02716 0.27 +0.9 2,564,772 + SMc02716 0.75 -0.0 2,564,825 - -2.5 2,564,860 + +0.8 2,564,860 + +0.2 2,564,861 - +0.8 2,564,861 - +2.3 2,564,861 - +0.4 2,564,863 - +1.4 2,564,888 - +0.8 2,565,145 - SMc02717 0.10 +0.0 2,565,175 - SMc02717 0.12 -2.9 2,565,348 + SMc02717 0.22 -0.1 2,565,349 - SMc02717 0.22 -2.0 2,565,463 + SMc02717 0.29 +1.4 2,565,463 + SMc02717 0.29 +0.8 2,565,463 + SMc02717 0.29 +0.8 2,565,463 + SMc02717 0.29 +0.3 2,565,464 - SMc02717 0.29 -0.1 2,565,466 + SMc02717 0.29 -0.5 2,565,468 + SMc02717 0.29 -0.9 2,565,469 - SMc02717 0.29 +0.4 2,565,469 - SMc02717 0.29 -0.1 2,565,469 - SMc02717 0.29 +1.4 2,565,469 - SMc02717 0.29 -0.8 2,565,469 - SMc02717 0.29 +1.6 2,565,469 - SMc02717 0.29 -0.3 2,565,484 + SMc02717 0.30 -0.0 2,565,486 + SMc02717 0.30 -0.2 2,565,486 + SMc02717 0.30 +0.8 2,565,487 - SMc02717 0.30 -1.6 2,565,537 + SMc02717 0.33 +0.2 2,565,537 + SMc02717 0.33 -2.0 2,565,573 + SMc02717 0.35 -1.6 2,565,574 - SMc02717 0.35 -1.5 2,565,574 - SMc02717 0.35 +0.8 2,565,574 - SMc02717 0.35 -2.2 2,565,578 + SMc02717 0.35 -0.1 2,565,663 + SMc02717 0.40 -3.2 2,565,664 - SMc02717 0.40 -1.8 2,565,678 - SMc02717 0.41 -1.5 2,565,681 + SMc02717 0.41 -0.6 2,565,681 + SMc02717 0.41 -0.5 2,565,681 + SMc02717 0.41 -2.4 2,565,682 - SMc02717 0.42 -0.5 2,565,682 - SMc02717 0.42 +1.2 2,565,717 + SMc02717 0.44 +0.5 2,565,724 - SMc02717 0.44 +2.0
Or see this region's nucleotide sequence