Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02701 and SMc02702 overlap by 4 nucleotides SMc02702 and SMc02703 are separated by 298 nucleotides SMc02703 and SMc02704 are separated by 3 nucleotides SMc02704 and SMc02705 overlap by 4 nucleotides
SMc02701: SMc02701 - hypothetical protein, at 2,549,297 to 2,549,929
SMc02701
SMc02702: SMc02702 - hypothetical protein, at 2,549,926 to 2,550,609
SMc02702
SMc02703: SMc02703 - hypothetical protein, at 2,550,908 to 2,551,921
SMc02703
SMc02704: SMc02704 - hypothetical protein, at 2,551,925 to 2,552,845
SMc02704
SMc02705: SMc02705 - hypothetical protein, at 2,552,842 to 2,555,655
SMc02705
Position (kb)
2550
2551
2552 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.047 kb on + strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.048 kb on - strand, within SMc02702 at 2550.098 kb on + strand, within SMc02702 at 2550.293 kb on + strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.294 kb on - strand, within SMc02702 at 2550.374 kb on + strand, within SMc02702 at 2550.375 kb on - strand, within SMc02702 at 2550.375 kb on - strand, within SMc02702 at 2550.375 kb on - strand, within SMc02702 at 2550.653 kb on + strand at 2550.654 kb on - strand at 2550.662 kb on + strand at 2550.662 kb on + strand at 2550.685 kb on + strand at 2550.701 kb on - strand at 2550.737 kb on + strand at 2550.796 kb on + strand at 2552.794 kb on + strand at 2552.794 kb on + strand at 2552.794 kb on + strand at 2552.794 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 2,550,047 + SMc02702 0.18 -0.4 2,550,047 + SMc02702 0.18 -0.8 2,550,047 + SMc02702 0.18 -1.0 2,550,047 + SMc02702 0.18 +0.3 2,550,047 + SMc02702 0.18 -2.7 2,550,048 - SMc02702 0.18 +0.6 2,550,048 - SMc02702 0.18 +1.4 2,550,048 - SMc02702 0.18 -1.2 2,550,048 - SMc02702 0.18 +1.9 2,550,098 + SMc02702 0.25 -2.5 2,550,293 + SMc02702 0.54 -3.4 2,550,294 - SMc02702 0.54 +0.3 2,550,294 - SMc02702 0.54 -0.3 2,550,294 - SMc02702 0.54 -2.5 2,550,294 - SMc02702 0.54 +0.3 2,550,294 - SMc02702 0.54 -0.1 2,550,294 - SMc02702 0.54 +0.8 2,550,374 + SMc02702 0.65 -1.9 2,550,375 - SMc02702 0.66 -0.6 2,550,375 - SMc02702 0.66 +0.4 2,550,375 - SMc02702 0.66 -0.8 2,550,653 + +0.3 2,550,654 - -0.3 2,550,662 + -1.5 2,550,662 + -1.5 2,550,685 + -1.2 2,550,701 - -1.2 2,550,737 + -3.2 2,550,796 + -0.0 2,552,794 + -5.6 2,552,794 + -0.3 2,552,794 + -3.1 2,552,794 + +0.3
Or see this region's nucleotide sequence