Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02633 and SMc02632 overlap by 4 nucleotides SMc02632 and SMc02631 are separated by 78 nucleotides SMc02631 and SMc02603 are separated by 127 nucleotides
SMc02633: SMc02633 - hypothetical protein, at 1,187,692 to 1,190,478
SMc02633
SMc02632: SMc02632 - hypothetical protein, at 1,190,475 to 1,191,131
SMc02632
SMc02631: SMc02631 - hypothetical protein, at 1,191,210 to 1,192,061
SMc02631
SMc02603: SMc02603 - transport transmembrane protein, at 1,192,189 to 1,193,427
SMc02603
Position (kb)
1191
1192
1193 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1 at 1190.212 kb on + strand at 1190.212 kb on + strand at 1190.212 kb on + strand at 1190.213 kb on - strand at 1190.213 kb on - strand at 1190.213 kb on - strand at 1190.402 kb on + strand at 1190.429 kb on + strand at 1190.429 kb on + strand at 1190.429 kb on + strand at 1190.430 kb on - strand at 1190.430 kb on - strand at 1190.780 kb on + strand, within SMc02632 at 1190.781 kb on - strand, within SMc02632 at 1190.917 kb on - strand, within SMc02632 at 1190.917 kb on - strand, within SMc02632 at 1190.917 kb on - strand, within SMc02632 at 1190.945 kb on + strand, within SMc02632 at 1191.740 kb on + strand, within SMc02631 at 1191.741 kb on - strand, within SMc02631 at 1191.980 kb on + strand at 1191.981 kb on - strand at 1192.127 kb on - strand at 1192.397 kb on + strand, within SMc02603 at 1192.471 kb on + strand, within SMc02603 at 1192.491 kb on + strand, within SMc02603 at 1192.491 kb on + strand, within SMc02603 at 1192.492 kb on - strand, within SMc02603 at 1192.492 kb on - strand, within SMc02603 at 1192.492 kb on - strand, within SMc02603 at 1192.524 kb on + strand, within SMc02603 at 1192.525 kb on - strand, within SMc02603 at 1192.637 kb on + strand, within SMc02603 at 1192.705 kb on + strand, within SMc02603 at 1192.867 kb on + strand, within SMc02603 at 1192.867 kb on + strand, within SMc02603 at 1192.868 kb on - strand, within SMc02603 at 1192.868 kb on - strand, within SMc02603 at 1192.868 kb on - strand, within SMc02603 at 1192.939 kb on + strand, within SMc02603 at 1192.940 kb on - strand, within SMc02603 at 1192.940 kb on - strand, within SMc02603 at 1192.940 kb on - strand, within SMc02603 at 1192.970 kb on - strand, within SMc02603 at 1193.059 kb on + strand, within SMc02603 at 1193.059 kb on + strand, within SMc02603
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 1,190,212 + -0.2 1,190,212 + -0.4 1,190,212 + +0.7 1,190,213 - +0.8 1,190,213 - -2.3 1,190,213 - +0.6 1,190,402 + +0.0 1,190,429 + -2.1 1,190,429 + -3.5 1,190,429 + +0.7 1,190,430 - +1.5 1,190,430 - -1.8 1,190,780 + SMc02632 0.46 -0.8 1,190,781 - SMc02632 0.47 -1.9 1,190,917 - SMc02632 0.67 +1.2 1,190,917 - SMc02632 0.67 +0.9 1,190,917 - SMc02632 0.67 -1.9 1,190,945 + SMc02632 0.72 +1.3 1,191,740 + SMc02631 0.62 -1.5 1,191,741 - SMc02631 0.62 -3.5 1,191,980 + +0.9 1,191,981 - +1.7 1,192,127 - +0.3 1,192,397 + SMc02603 0.17 +1.0 1,192,471 + SMc02603 0.23 -1.0 1,192,491 + SMc02603 0.24 -2.7 1,192,491 + SMc02603 0.24 -0.4 1,192,492 - SMc02603 0.24 -0.6 1,192,492 - SMc02603 0.24 +1.0 1,192,492 - SMc02603 0.24 +1.5 1,192,524 + SMc02603 0.27 +0.7 1,192,525 - SMc02603 0.27 -1.9 1,192,637 + SMc02603 0.36 -1.9 1,192,705 + SMc02603 0.42 +0.3 1,192,867 + SMc02603 0.55 +0.5 1,192,867 + SMc02603 0.55 -0.3 1,192,868 - SMc02603 0.55 +0.1 1,192,868 - SMc02603 0.55 -0.2 1,192,868 - SMc02603 0.55 -0.9 1,192,939 + SMc02603 0.61 -1.4 1,192,940 - SMc02603 0.61 -0.9 1,192,940 - SMc02603 0.61 -0.5 1,192,940 - SMc02603 0.61 -5.2 1,192,970 - SMc02603 0.63 -0.5 1,193,059 + SMc02603 0.70 +0.6 1,193,059 + SMc02603 0.70 -1.4
Or see this region's nucleotide sequence