Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02575 and SMc02576 overlap by 11 nucleotides SMc02576 and SMc02577 overlap by 4 nucleotides SMc02577 and SMc02578 are separated by 206 nucleotides
SMc02575: SMc02575 - ATP-dependent protease peptidase subunit, at 61,537 to 62,094
SMc02575
SMc02576: SMc02576 - acetyltransferase, at 62,084 to 62,605
SMc02576
SMc02577: SMc02577 - ATP-dependent protease ATP-binding subunit HslU, at 62,602 to 63,909
SMc02577
SMc02578: SMc02578 - hypothetical protein, at 64,116 to 65,066
SMc02578
Position (kb) 62
63
64 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 61.650 kb on + strand, within SMc02575 at 61.650 kb on + strand, within SMc02575 at 61.800 kb on - strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.821 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.831 kb on + strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.832 kb on - strand, within SMc02575 at 61.954 kb on + strand, within SMc02575 at 61.955 kb on - strand, within SMc02575 at 62.050 kb on + strand at 62.050 kb on + strand at 62.051 kb on - strand at 62.282 kb on + strand, within SMc02576 at 62.282 kb on + strand, within SMc02576 at 62.647 kb on + strand at 62.647 kb on + strand at 62.648 kb on - strand at 62.661 kb on + strand at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.757 kb on + strand, within SMc02577 at 62.758 kb on - strand, within SMc02577 at 62.758 kb on - strand, within SMc02577 at 62.872 kb on + strand, within SMc02577 at 62.873 kb on - strand, within SMc02577 at 63.241 kb on + strand, within SMc02577 at 63.241 kb on + strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.242 kb on - strand, within SMc02577 at 63.640 kb on + strand, within SMc02577 at 63.641 kb on - strand, within SMc02577 at 63.641 kb on - strand, within SMc02577 at 63.847 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.898 kb on + strand at 63.900 kb on + strand at 63.900 kb on + strand at 63.901 kb on - strand at 63.901 kb on - strand at 63.901 kb on - strand at 64.023 kb on + strand at 64.838 kb on + strand, within SMc02578
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 61,650 + SMc02575 0.20 +2.6 61,650 + SMc02575 0.20 -1.8 61,800 - SMc02575 0.47 -0.1 61,821 + SMc02575 0.51 +1.4 61,821 + SMc02575 0.51 +1.1 61,831 + SMc02575 0.53 +0.6 61,831 + SMc02575 0.53 +1.0 61,832 - SMc02575 0.53 +0.9 61,832 - SMc02575 0.53 +1.4 61,954 + SMc02575 0.75 +0.6 61,955 - SMc02575 0.75 +1.5 62,050 + +0.7 62,050 + +1.0 62,051 - +0.1 62,282 + SMc02576 0.38 +0.4 62,282 + SMc02576 0.38 -0.6 62,647 + +1.0 62,647 + +1.8 62,648 - +1.8 62,661 + -0.4 62,757 + SMc02577 0.12 -1.7 62,757 + SMc02577 0.12 -0.7 62,757 + SMc02577 0.12 +2.0 62,757 + SMc02577 0.12 +1.7 62,758 - SMc02577 0.12 +1.4 62,758 - SMc02577 0.12 +3.9 62,872 + SMc02577 0.21 +1.6 62,873 - SMc02577 0.21 +2.0 63,241 + SMc02577 0.49 -0.2 63,241 + SMc02577 0.49 +3.0 63,242 - SMc02577 0.49 +1.3 63,242 - SMc02577 0.49 +2.7 63,242 - SMc02577 0.49 +3.1 63,640 + SMc02577 0.79 +2.7 63,641 - SMc02577 0.79 -1.0 63,641 - SMc02577 0.79 +0.5 63,847 + +0.6 63,898 + +1.0 63,898 + +0.8 63,898 + -2.7 63,898 + -0.4 63,900 + -0.0 63,900 + -3.5 63,901 - +2.2 63,901 - +1.7 63,901 - +1.5 64,023 + +2.6 64,838 + SMc02578 0.76 -2.0
Or see this region's nucleotide sequence