Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02448 and SMc02449 are separated by 5 nucleotides SMc02449 and SMc02450 overlap by 32 nucleotides SMc02450 and SMc02451 are separated by 160 nucleotides
SMc02448: SMc02448 - mutator protein 7,8-dihydro-8-oxoguanine-triphosphatase, at 2,830,074 to 2,830,481
SMc02448
SMc02449: SMc02449 - acetyltransferase, at 2,830,487 to 2,831,413
SMc02449
SMc02450: SMc02450 - bifunctional ornithine acetyltransferase/N-acetylglutamate synthase, at 2,831,382 to 2,832,623
SMc02450
SMc02451: SMc02451 - hypothetical protein, at 2,832,784 to 2,833,638
SMc02451
Position (kb)
2831
2832
2833 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2830.472 kb on + strand at 2831.306 kb on - strand, within SMc02449 at 2831.306 kb on - strand, within SMc02449 at 2831.381 kb on - strand at 2831.393 kb on - strand at 2831.414 kb on - strand at 2831.706 kb on - strand, within SMc02450 at 2831.706 kb on - strand, within SMc02450 at 2832.144 kb on - strand, within SMc02450 at 2832.525 kb on - strand at 2832.786 kb on - strand at 2832.819 kb on - strand at 2833.018 kb on - strand, within SMc02451 at 2833.018 kb on - strand, within SMc02451
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 2,830,472 + +0.2 2,831,306 - SMc02449 0.88 -1.3 2,831,306 - SMc02449 0.88 +1.9 2,831,381 - +1.4 2,831,393 - -1.9 2,831,414 - -2.9 2,831,706 - SMc02450 0.26 -2.0 2,831,706 - SMc02450 0.26 -3.0 2,832,144 - SMc02450 0.61 +0.1 2,832,525 - +0.2 2,832,786 - +1.1 2,832,819 - -2.3 2,833,018 - SMc02451 0.27 -0.8 2,833,018 - SMc02451 0.27 -1.4
Or see this region's nucleotide sequence