Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02315 and SMc02316 are separated by 202 nucleotides SMc02316 and SMc02317 are separated by 279 nucleotides SMc02317 and SMc02318 are separated by 146 nucleotides SMc02318 and SMc02319 are separated by 79 nucleotides SMc02319 and SMc02320 are separated by 70 nucleotides
SMc02315: SMc02315 - hypothetical protein, at 686,894 to 687,976
SMc02315
SMc02316: SMc02316 - hypothetical protein, at 688,179 to 688,490
SMc02316
SMc02317: SMc02317 - signal peptide protein, at 688,770 to 689,159
SMc02317
SMc02318: SMc02318 - hypothetical protein, at 689,306 to 689,767
SMc02318
SMc02319: SMc02319 - hypothetical protein, at 689,847 to 690,035
SMc02319
SMc02320: SMc02320 - hypothetical protein, at 690,106 to 690,360
SMc02320
Position (kb) 688
689
690 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 687.810 kb on - strand, within SMc02315 at 687.810 kb on - strand, within SMc02315 at 687.894 kb on - strand at 688.749 kb on - strand at 688.749 kb on - strand at 688.777 kb on + strand at 688.783 kb on + strand at 688.783 kb on + strand at 688.784 kb on - strand at 688.829 kb on - strand, within SMc02317 at 688.842 kb on + strand, within SMc02317 at 688.843 kb on - strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.889 kb on - strand, within SMc02317 at 688.964 kb on + strand, within SMc02317 at 688.964 kb on + strand, within SMc02317 at 688.965 kb on - strand, within SMc02317 at 688.965 kb on - strand, within SMc02317 at 688.966 kb on + strand, within SMc02317 at 688.967 kb on - strand, within SMc02317 at 688.967 kb on - strand, within SMc02317 at 689.123 kb on + strand at 689.181 kb on - strand at 689.248 kb on + strand at 689.248 kb on + strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.301 kb on - strand at 689.307 kb on + strand at 689.556 kb on + strand, within SMc02318 at 689.639 kb on + strand at 689.640 kb on - strand, within SMc02318 at 689.908 kb on + strand, within SMc02319 at 689.908 kb on + strand, within SMc02319 at 689.908 kb on + strand, within SMc02319 at 689.908 kb on + strand, within SMc02319 at 689.909 kb on - strand, within SMc02319 at 689.989 kb on + strand, within SMc02319 at 690.089 kb on + strand at 690.090 kb on - strand at 690.090 kb on - strand at 690.090 kb on - strand at 690.097 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 687,810 - SMc02315 0.85 -1.2 687,810 - SMc02315 0.85 +1.6 687,894 - +2.2 688,749 - -0.5 688,749 - -0.6 688,777 + +0.7 688,783 + +0.5 688,783 + +1.0 688,784 - +1.8 688,829 - SMc02317 0.15 +0.8 688,842 + SMc02317 0.18 +0.0 688,843 - SMc02317 0.19 -0.8 688,888 + SMc02317 0.30 -0.8 688,888 + SMc02317 0.30 -2.0 688,888 + SMc02317 0.30 -0.1 688,889 - SMc02317 0.31 +0.0 688,964 + SMc02317 0.50 -1.5 688,964 + SMc02317 0.50 -0.5 688,965 - SMc02317 0.50 +1.0 688,965 - SMc02317 0.50 -0.8 688,966 + SMc02317 0.50 -3.0 688,967 - SMc02317 0.51 -0.2 688,967 - SMc02317 0.51 +2.8 689,123 + -3.4 689,181 - -4.0 689,248 + +0.6 689,248 + -1.0 689,249 - +2.7 689,249 - +0.3 689,249 - -1.4 689,249 - +0.5 689,249 - +0.4 689,301 - -0.1 689,307 + -2.5 689,556 + SMc02318 0.54 -0.5 689,639 + +0.8 689,640 - SMc02318 0.72 +0.1 689,908 + SMc02319 0.32 +0.5 689,908 + SMc02319 0.32 +0.7 689,908 + SMc02319 0.32 -0.5 689,908 + SMc02319 0.32 -2.2 689,909 - SMc02319 0.33 -1.0 689,989 + SMc02319 0.75 -0.2 690,089 + -3.2 690,090 - -3.8 690,090 - -2.6 690,090 - +4.5 690,097 + +2.0
Or see this region's nucleotide sequence