Strain Fitness in Sinorhizobium meliloti 1021 around SMc02295

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02292 and SMc02295 are separated by 3 nucleotidesSMc02295 and SMc02296 overlap by 4 nucleotides SMc02292: SMc02292 - type I restriction enzyme R protein, at 664,606 to 667,803 SMc02292 SMc02295: SMc02295 - specificity protein S, at 667,807 to 669,081 SMc02295 SMc02296: SMc02296 - modification enzyme transmembrane protein, at 669,078 to 670,658 SMc02296 Position (kb) 667 668 669 670Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 666.855 kb on + strand, within SMc02292at 666.856 kb on - strand, within SMc02292at 666.972 kb on + strand, within SMc02292at 666.972 kb on + strand, within SMc02292at 666.973 kb on - strand, within SMc02292at 666.973 kb on - strand, within SMc02292at 667.103 kb on + strand, within SMc02292at 667.103 kb on + strand, within SMc02292at 667.104 kb on - strand, within SMc02292at 667.104 kb on - strand, within SMc02292at 667.121 kb on + strand, within SMc02292at 667.122 kb on - strand, within SMc02292at 667.209 kb on - strand, within SMc02292at 667.360 kb on - strand, within SMc02292at 667.436 kb on + strand, within SMc02292at 667.436 kb on + strand, within SMc02292at 667.604 kb on + strandat 667.605 kb on - strandat 667.661 kb on + strandat 667.661 kb on + strandat 667.808 kb on + strandat 667.867 kb on + strandat 667.867 kb on + strandat 667.868 kb on - strandat 667.868 kb on - strandat 667.868 kb on - strandat 667.905 kb on + strandat 667.906 kb on - strandat 667.906 kb on - strandat 667.969 kb on - strand, within SMc02295at 667.969 kb on - strand, within SMc02295at 667.969 kb on - strand, within SMc02295at 667.997 kb on - strand, within SMc02295at 668.148 kb on + strand, within SMc02295at 668.148 kb on + strand, within SMc02295at 668.149 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.171 kb on - strand, within SMc02295at 668.235 kb on + strand, within SMc02295at 668.241 kb on + strand, within SMc02295at 668.241 kb on + strand, within SMc02295at 668.320 kb on + strand, within SMc02295at 668.320 kb on + strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.321 kb on - strand, within SMc02295at 668.328 kb on + strand, within SMc02295at 668.329 kb on - strand, within SMc02295at 668.329 kb on - strand, within SMc02295at 668.329 kb on - strandat 668.330 kb on + strand, within SMc02295at 668.330 kb on + strand, within SMc02295at 668.331 kb on - strand, within SMc02295at 668.331 kb on - strand, within SMc02295at 668.337 kb on + strand, within SMc02295at 668.338 kb on - strand, within SMc02295at 668.623 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.625 kb on + strand, within SMc02295at 668.626 kb on - strand, within SMc02295at 668.626 kb on - strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.637 kb on + strand, within SMc02295at 668.638 kb on - strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.647 kb on + strand, within SMc02295at 668.648 kb on - strand, within SMc02295at 668.706 kb on + strand, within SMc02295at 668.717 kb on + strand, within SMc02295at 668.717 kb on + strand, within SMc02295at 668.718 kb on - strand, within SMc02295at 668.718 kb on - strand, within SMc02295at 668.863 kb on + strand, within SMc02295at 668.864 kb on - strand, within SMc02295at 669.096 kb on + strandat 669.223 kb on + strandat 669.224 kb on - strandat 669.237 kb on - strand, within SMc02296at 669.390 kb on - strand, within SMc02296at 669.708 kb on + strand, within SMc02296at 669.718 kb on + strand, within SMc02296at 669.719 kb on - strand, within SMc02296at 669.719 kb on - strand, within SMc02296at 669.798 kb on + strand, within SMc02296at 669.798 kb on + strand, within SMc02296at 669.799 kb on - strand, within SMc02296at 669.904 kb on + strand, within SMc02296at 669.997 kb on + strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296at 669.998 kb on - strand, within SMc02296

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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666,855 + SMc02292 0.70 +0.7
666,856 - SMc02292 0.70 +2.5
666,972 + SMc02292 0.74 +1.5
666,972 + SMc02292 0.74 +1.4
666,973 - SMc02292 0.74 +1.8
666,973 - SMc02292 0.74 +0.0
667,103 + SMc02292 0.78 -1.2
667,103 + SMc02292 0.78 -0.8
667,104 - SMc02292 0.78 -0.2
667,104 - SMc02292 0.78 +0.5
667,121 + SMc02292 0.79 -0.3
667,122 - SMc02292 0.79 -0.1
667,209 - SMc02292 0.81 -0.6
667,360 - SMc02292 0.86 +0.2
667,436 + SMc02292 0.88 -0.3
667,436 + SMc02292 0.88 -2.0
667,604 + +0.1
667,605 - +0.8
667,661 + +2.6
667,661 + -1.2
667,808 + -2.0
667,867 + -1.4
667,867 + +0.2
667,868 - -0.3
667,868 - +0.1
667,868 - -1.2
667,905 + +0.1
667,906 - -2.0
667,906 - +0.1
667,969 - SMc02295 0.13 +0.1
667,969 - SMc02295 0.13 +0.1
667,969 - SMc02295 0.13 -3.0
667,997 - SMc02295 0.15 +1.3
668,148 + SMc02295 0.27 -1.1
668,148 + SMc02295 0.27 +0.8
668,149 - SMc02295 0.27 +0.4
668,171 - SMc02295 0.29 -3.6
668,171 - SMc02295 0.29 +1.7
668,171 - SMc02295 0.29 +0.8
668,235 + SMc02295 0.34 +2.4
668,241 + SMc02295 0.34 +0.0
668,241 + SMc02295 0.34 +1.3
668,320 + SMc02295 0.40 -0.7
668,320 + SMc02295 0.40 -0.7
668,321 - SMc02295 0.40 -0.9
668,321 - SMc02295 0.40 +0.1
668,321 - SMc02295 0.40 +0.8
668,321 - SMc02295 0.40 -3.7
668,328 + SMc02295 0.41 -2.5
668,329 - SMc02295 0.41 -0.5
668,329 - SMc02295 0.41 -0.2
668,329 - +0.8
668,330 + SMc02295 0.41 -1.0
668,330 + SMc02295 0.41 +2.5
668,331 - SMc02295 0.41 -2.9
668,331 - SMc02295 0.41 +1.0
668,337 + SMc02295 0.42 -0.1
668,338 - SMc02295 0.42 -3.6
668,623 + SMc02295 0.64 -1.2
668,625 + SMc02295 0.64 -3.0
668,625 + SMc02295 0.64 +0.2
668,625 + SMc02295 0.64 -0.2
668,626 - SMc02295 0.64 -0.9
668,626 - SMc02295 0.64 +0.3
668,637 + SMc02295 0.65 -2.0
668,637 + SMc02295 0.65 +2.4
668,637 + SMc02295 0.65 -2.6
668,638 - SMc02295 0.65 +1.8
668,647 + SMc02295 0.66 +0.3
668,647 + SMc02295 0.66 +1.9
668,647 + SMc02295 0.66 -2.5
668,647 + SMc02295 0.66 +0.1
668,647 + SMc02295 0.66 -4.3
668,648 - SMc02295 0.66 -0.0
668,706 + SMc02295 0.71 +0.5
668,717 + SMc02295 0.71 +0.5
668,717 + SMc02295 0.71 -1.5
668,718 - SMc02295 0.71 +2.7
668,718 - SMc02295 0.71 +0.3
668,863 + SMc02295 0.83 -2.8
668,864 - SMc02295 0.83 +0.6
669,096 + -1.5
669,223 + +0.5
669,224 - +0.8
669,237 - SMc02296 0.10 +1.4
669,390 - SMc02296 0.20 +0.3
669,708 + SMc02296 0.40 -1.8
669,718 + SMc02296 0.40 -2.6
669,719 - SMc02296 0.41 +0.8
669,719 - SMc02296 0.41 -0.1
669,798 + SMc02296 0.46 +1.3
669,798 + SMc02296 0.46 +0.9
669,799 - SMc02296 0.46 +0.6
669,904 + SMc02296 0.52 +0.8
669,997 + SMc02296 0.58 -0.0
669,998 - SMc02296 0.58 -1.2
669,998 - SMc02296 0.58 -3.8
669,998 - SMc02296 0.58 +0.3

Or see this region's nucleotide sequence