Experiment: Polymyxin B sulfate 0.00005 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02159 and SMc02158 overlap by 4 nucleotides SMc02158 and SMc02157 are separated by 7 nucleotides SMc02157 and SMc02156 are separated by 150 nucleotides
SMc02159: SMc02159 - hypothetical protein, at 537,425 to 538,090
SMc02159
SMc02158: SMc02158 - acyltransferase, at 538,087 to 538,698
SMc02158
SMc02157: SMc02157 - hypothetical protein, at 538,706 to 539,647
SMc02157
SMc02156: SMc02156 - hypothetical protein, at 539,798 to 540,595
SMc02156
Position (kb) 538
539
540 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 537.734 kb on + strand, within SMc02159 at 537.735 kb on - strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.788 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.848 kb on + strand, within SMc02159 at 537.849 kb on - strand, within SMc02159 at 537.992 kb on + strand, within SMc02159 at 538.180 kb on + strand, within SMc02158 at 538.181 kb on - strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.279 kb on + strand, within SMc02158 at 538.308 kb on + strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.309 kb on - strand, within SMc02158 at 538.574 kb on + strand, within SMc02158 at 538.729 kb on + strand at 538.846 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.940 kb on + strand, within SMc02157 at 538.941 kb on - strand, within SMc02157 at 539.012 kb on + strand, within SMc02157 at 539.013 kb on - strand, within SMc02157 at 539.033 kb on + strand, within SMc02157 at 539.057 kb on + strand, within SMc02157 at 539.088 kb on - strand, within SMc02157 at 539.088 kb on - strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.176 kb on + strand, within SMc02157 at 539.189 kb on + strand, within SMc02157 at 539.306 kb on + strand, within SMc02157 at 539.306 kb on + strand, within SMc02157 at 539.307 kb on - strand, within SMc02157 at 539.777 kb on - strand at 539.777 kb on - strand at 539.918 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.098 kb on + strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.099 kb on - strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.132 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.134 kb on + strand, within SMc02156 at 540.476 kb on - strand, within SMc02156 at 540.539 kb on + strand at 540.599 kb on + strand at 540.600 kb on - strand at 540.600 kb on - strand at 540.613 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml remove 537,734 + SMc02159 0.46 -0.1 537,735 - SMc02159 0.47 +1.2 537,788 + SMc02159 0.55 -0.4 537,788 + SMc02159 0.55 -0.2 537,848 + SMc02159 0.64 -1.0 537,848 + SMc02159 0.64 -0.7 537,849 - SMc02159 0.64 +0.5 537,992 + SMc02159 0.85 +1.2 538,180 + SMc02158 0.15 -2.7 538,181 - SMc02158 0.15 +2.4 538,279 + SMc02158 0.31 +2.4 538,279 + SMc02158 0.31 +0.5 538,308 + SMc02158 0.36 +0.8 538,309 - SMc02158 0.36 -1.6 538,309 - SMc02158 0.36 -2.5 538,309 - SMc02158 0.36 +0.3 538,574 + SMc02158 0.80 +2.2 538,729 + +0.5 538,846 + SMc02157 0.15 +2.3 538,940 + SMc02157 0.25 -0.3 538,940 + SMc02157 0.25 -0.9 538,940 + SMc02157 0.25 -0.7 538,941 - SMc02157 0.25 +0.9 539,012 + SMc02157 0.32 -2.1 539,013 - SMc02157 0.33 +0.9 539,033 + SMc02157 0.35 +1.6 539,057 + SMc02157 0.37 -0.7 539,088 - SMc02157 0.41 -2.9 539,088 - SMc02157 0.41 -1.7 539,176 + SMc02157 0.50 +0.1 539,176 + SMc02157 0.50 -1.8 539,176 + SMc02157 0.50 -2.5 539,189 + SMc02157 0.51 -2.7 539,306 + SMc02157 0.64 -1.1 539,306 + SMc02157 0.64 -0.7 539,307 - SMc02157 0.64 +2.3 539,777 - +0.2 539,777 - -2.0 539,918 + SMc02156 0.15 -0.2 540,098 + SMc02156 0.38 -1.4 540,098 + SMc02156 0.38 +0.1 540,098 + SMc02156 0.38 +2.0 540,099 - SMc02156 0.38 -1.1 540,099 - SMc02156 0.38 +0.2 540,132 + SMc02156 0.42 -0.3 540,132 + SMc02156 0.42 -1.1 540,134 + SMc02156 0.42 -1.7 540,134 + SMc02156 0.42 -0.8 540,476 - SMc02156 0.85 +1.6 540,539 + +0.6 540,599 + +0.4 540,600 - -0.9 540,600 - +0.4 540,613 + -2.3
Or see this region's nucleotide sequence