Strain Fitness in Sinorhizobium meliloti 1021 around SMc02115

Experiment: Polymyxin B sulfate 0.00005 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02116 and SMc02115 are separated by 27 nucleotidesSMc02115 and SMc02114 are separated by 189 nucleotides SMc02116: SMc02116 - salicylate hydroxylase, at 1,594,688 to 1,595,851 SMc02116 SMc02115: SMc02115 - hypothetical protein, at 1,595,879 to 1,596,124 SMc02115 SMc02114: SMc02114 - hypothetical protein, at 1,596,314 to 1,597,093 SMc02114 Position (kb) 1595 1596 1597Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 1595.891 kb on - strandat 1595.968 kb on - strand, within SMc02115at 1596.138 kb on - strandat 1596.138 kb on - strandat 1596.138 kb on - strandat 1596.138 kb on - strandat 1596.138 kb on - strandat 1596.138 kb on - strandat 1596.140 kb on - strandat 1596.187 kb on - strandat 1596.187 kb on - strandat 1596.187 kb on - strandat 1596.269 kb on + strandat 1596.277 kb on - strandat 1596.300 kb on - strandat 1596.300 kb on - strandat 1596.300 kb on - strandat 1596.555 kb on - strand, within SMc02114at 1596.555 kb on - strand, within SMc02114at 1596.718 kb on - strand, within SMc02114at 1596.867 kb on + strand, within SMc02114at 1596.867 kb on + strand, within SMc02114at 1596.868 kb on - strand, within SMc02114at 1596.904 kb on - strand, within SMc02114at 1596.913 kb on - strand, within SMc02114

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.00005 mg/ml
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1,595,891 - -1.2
1,595,968 - SMc02115 0.36 -4.7
1,596,138 - +2.4
1,596,138 - -0.2
1,596,138 - -1.0
1,596,138 - +4.9
1,596,138 - -0.7
1,596,138 - +1.1
1,596,140 - +0.7
1,596,187 - -0.1
1,596,187 - -0.9
1,596,187 - +1.9
1,596,269 + -1.3
1,596,277 - +1.8
1,596,300 - -1.4
1,596,300 - -0.9
1,596,300 - -1.7
1,596,555 - SMc02114 0.31 -1.6
1,596,555 - SMc02114 0.31 -1.2
1,596,718 - SMc02114 0.52 -4.6
1,596,867 + SMc02114 0.71 -3.9
1,596,867 + SMc02114 0.71 -2.4
1,596,868 - SMc02114 0.71 -2.9
1,596,904 - SMc02114 0.76 -0.8
1,596,913 - SMc02114 0.77 -2.1

Or see this region's nucleotide sequence